Os03g0572900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os03g0572900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.27 | 0.451 | 10.8 | -0.386 | 3.39 | -0.86 | 0.305 | -0.0827 | -0.534 | 7.75 | 38.05 | 10 | -- | -- |
| 92.29 | 0.447 | 10.8 | -0.381 | 3.39 | -0.853 | 0.325 | -- | -0.536 | 7.76 | 37.9 | 10 | -- | -- |
| 92.53 | 0.448 | 10.8 | -0.386 | 3.39 | -0.86 | -- | -0.0827 | -0.534 | 7.75 | 38.05 | 10 | -- | -- |
| 92.64 | 0.448 | 10.8 | -0.376 | 3.38 | -0.869 | -- | -- | -0.535 | 7.74 | 37.71 | 10 | -- | -- |
| 548.18 | 1.1 | 10.9 | -0.275 | -- | -1.79 | -- | -0.292 | -0.51 | -- | 8.1 | 8 | -- | -- |
| 105.42 | 0.481 | 10.8 | -0.359 | 3.71 | -- | 0.506 | -- | -0.519 | 8.38 | -- | -- | -- | -- |
| 106.23 | 0.483 | 10.8 | -0.343 | 3.71 | -- | -- | -- | -0.52 | 8.38 | -- | -- | -- | -- |
| 543.22 | 1.09 | 10.9 | -0.255 | -- | -1.83 | -- | -- | -0.503 | -- | 8.53 | 11 | -- | -- |
| 96.35 | 0.457 | 10.8 | -- | 3.39 | -0.862 | -- | -- | -0.492 | 7.76 | 38.66 | 10 | -- | -- |
| 872.5 | 1.38 | 10.9 | -0.322 | -- | -- | -- | -- | -0.481 | -- | -- | -- | -- | -- |
| 109.33 | 0.489 | 10.8 | -- | 3.71 | -- | -- | -- | -0.481 | 8.39 | -- | -- | -- | -- |
| 544.92 | 1.09 | 10.9 | -- | -- | -1.83 | -- | -- | -0.475 | -- | 8.53 | 11 | -- | -- |
| 875.24 | 1.38 | 10.9 | -- | -- | -- | -- | -- | -0.445 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.96 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 3 | 82.57 | radiation | 10.0 | 270 | > th | dose independent | rect. | 9 | 5 |
| 8 | 83.88 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 15 | 84.91 | radiation | 10.0 | 90 | < th | dose independent | rect. | 7 | 12 |
| 33 | 86.04 | radiation | 20.0 | 10 | < th | dose dependent | sin | 20 | NA |
| 41 | 86.52 | humidity | 80.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 54 | 86.87 | radiation | 10.0 | 90 | < th | dose independent | rect. | 9 | 10 |
| 62 | 87.01 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 11 |
| 74 | 87.33 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 10 |
| 77 | 87.40 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 80 | 87.42 | radiation | 10.0 | 90 | < th | dose independent | rect. | 12 | 7 |
| 84 | 87.48 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 87 | 87.52 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 13 |
| 97 | 87.62 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 12 |
| 113 | 87.80 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 10 | 3 |
| 216 | 88.69 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 10 | 6 |
| 218 | 88.71 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 9 | 7 |
| 223 | 88.73 | radiation | 10.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 235 | 88.88 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 278 | 89.14 | radiation | 1.0 | 10 | > th | dose dependent | sin | 18 | NA |
| 284 | 89.17 | radiation | 10.0 | 10 | < th | dose independent | sin | 20 | NA |
| 285 | 89.18 | radiation | 10.0 | 10 | > th | dose independent | sin | 20 | NA |
| 289 | 89.18 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 291 | 89.19 | radiation | 1.0 | 90 | > th | dose dependent | sin | 21 | NA |
| 319 | 89.41 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 330 | 89.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 334 | 89.56 | radiation | 10.0 | 90 | > th | dose independent | sin | 22 | NA |
| 347 | 89.66 | radiation | 10.0 | 10 | < th | dose independent | rect. | 12 | 8 |
| 350 | 89.68 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 354 | 89.68 | radiation | 10.0 | 90 | > th | dose independent | rect. | 9 | 22 |
| 365 | 89.73 | radiation | 1.0 | 270 | < th | dose dependent | sin | 13 | NA |
| 380 | 89.82 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 9 | 22 |
| 385 | 89.85 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 4 |
| 402 | 89.94 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 11 |
| 415 | 90.00 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 426 | 90.04 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 475 | 90.17 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 11 |
| 511 | 90.27 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 21 |
| 518 | 90.28 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 521 | 90.30 | radiation | 10.0 | 10 | > th | dose independent | rect. | 10 | 21 |
| 537 | 90.37 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 538 | 90.37 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 575 | 90.41 | humidity | 70.0 | 270 | > th | dose independent | rect. | 18 | 11 |
| 628 | 90.59 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 641 | 90.64 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 649 | 90.68 | temperature | 20.0 | 90 | > th | dose independent | rect. | 16 | 3 |
| 651 | 90.68 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 677 | 90.78 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 4 |
| 679 | 90.78 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 20 |
| 700 | 90.80 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 701 | 90.81 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 16 | 3 |
| 707 | 90.83 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 20 |
| 709 | 90.83 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 748 | 90.89 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 7 | 12 |
| 760 | 90.92 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 762 | 90.93 | radiation | 1.0 | 270 | < th | dose independent | sin | 13 | NA |
| 780 | 90.95 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 790 | 90.97 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 22 |
| 831 | 91.09 | wind | 7.0 | 10 | < th | dose independent | rect. | 20 | 20 |
| 863 | 91.15 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 21 |
| 875 | 91.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 933 | 91.28 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 19 |
| 945 | 91.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 22 |
| 950 | 91.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 19 |
| 966 | 91.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 990 | 91.38 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 996 | 91.40 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 10 |