Os03g0571900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os03g0571900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.18 | 0.418 | 9.41 | 0.85 | 1.03 | -0.931 | 0.179 | 2.57 | 0.0594 | 9.02 | 25.99 | 1361 | -- | -- |
| 77.57 | 0.41 | 9.45 | 0.284 | 1 | -0.78 | 0.151 | -- | 0.135 | 9.12 | 22.78 | 8069 | -- | -- |
| 79.12 | 0.414 | 9.4 | 0.994 | 1.02 | -0.994 | -- | 3.22 | 0.0469 | 9.05 | 26.7 | 1382 | -- | -- |
| 77.59 | 0.41 | 9.44 | 0.32 | 1.01 | -0.809 | -- | -- | 0.153 | 9.1 | 22.36 | 8076 | -- | -- |
| 105.53 | 0.478 | 9.44 | 0.835 | -- | -1.65 | -- | 2.96 | 0.153 | -- | 24.37 | 815 | -- | -- |
| 100.66 | 0.47 | 9.51 | -0.0618 | 1.06 | -- | 0.213 | -- | -0.141 | 9.31 | -- | -- | -- | -- |
| 100.82 | 0.47 | 9.51 | -0.0543 | 1.06 | -- | -- | -- | -0.141 | 9.28 | -- | -- | -- | -- |
| 109.12 | 0.487 | 9.51 | 0.287 | -- | -1.42 | -- | -- | 0.00289 | -- | 24.1 | 802 | -- | -- |
| 79.5 | 0.415 | 9.46 | -- | 0.968 | -0.745 | -- | -- | 0.082 | 8.98 | 24.25 | 8064 | -- | -- |
| 165.82 | 0.602 | 9.54 | -0.059 | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
| 100.9 | 0.47 | 9.51 | -- | 1.06 | -- | -- | -- | -0.134 | 9.29 | -- | -- | -- | -- |
| 111.06 | 0.491 | 9.51 | -- | -- | -1.35 | -- | -- | -0.0183 | -- | 24.2 | 809 | -- | -- |
| 165.91 | 0.601 | 9.54 | -- | -- | -- | -- | -- | -0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.80 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 3 | 74.55 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 6 |
| 4 | 74.75 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 32 | 75.01 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 15 |
| 34 | 75.23 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 35 | 75.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 36 | 75.30 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 38 | 75.32 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 39 | 75.33 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 41 | 75.34 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 13 |
| 43 | 75.38 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 44 | 75.38 | radiation | 30 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 50 | 75.43 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 51 | 75.43 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 59 | 75.52 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 90 | 75.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 96 | 75.66 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 131 | 75.78 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 138 | 75.81 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 8 |
| 144 | 75.83 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 178 | 75.90 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 185 | 75.92 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 192 | 75.94 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 207 | 75.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 18 |
| 214 | 75.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 21 |
| 218 | 75.98 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 221 | 75.99 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 240 | 76.00 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 247 | 76.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 15 |
| 249 | 76.01 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 264 | 76.02 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 18 |
| 266 | 76.03 | humidity | 90 | 43200 | > th | dose independent | sin | 8 | NA |
| 281 | 76.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 19 |
| 289 | 76.04 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 302 | 76.05 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 339 | 76.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 355 | 76.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 17 |
| 385 | 76.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 390 | 76.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 418 | 76.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 435 | 76.12 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 444 | 76.13 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 465 | 76.14 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 466 | 76.14 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 486 | 76.15 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 499 | 76.15 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 501 | 76.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 9 |
| 536 | 76.17 | temperature | 20 | 43200 | < th | dose independent | sin | 11 | NA |
| 572 | 76.18 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 612 | 76.20 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 637 | 76.20 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 638 | 76.21 | temperature | 20 | 43200 | > th | dose independent | sin | 11 | NA |
| 676 | 76.22 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 15 |
| 751 | 76.25 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 814 | 76.28 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 853 | 76.29 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 22 |
| 898 | 76.31 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 943 | 76.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 945 | 76.32 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 20 |
| 948 | 76.32 | humidity | 90 | 43200 | > th | dose dependent | sin | 7 | NA |
| 967 | 76.33 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 17 |
| 989 | 76.33 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 8 |