Os03g0571700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TRANSPARENT TESTA 12 protein.
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Os03g0571700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TRANSPARENT TESTA 12 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.15 | 0.696 | 9.91 | -0.661 | 0.194 | -1.57 | -0.482 | 2.41 | -6.77 | 11.7 | 91.27 | 79 | -- | -- |
| 228.13 | 0.703 | 9.92 | -0.575 | 0.19 | -1.37 | -1.11 | -- | -6.73 | 12.5 | 90.88 | 77 | -- | -- |
| 219.68 | 0.69 | 9.92 | -0.645 | 0.244 | -1.55 | -- | 2.64 | -6.77 | 12.7 | 91.3 | 79 | -- | -- |
| 229.61 | 0.706 | 9.92 | -0.602 | 0.257 | -1.6 | -- | -- | -6.72 | 12 | 91.59 | 190 | -- | -- |
| 221.54 | 0.693 | 9.91 | -0.664 | -- | -1.61 | -- | 2.68 | -6.78 | -- | 91 | 52 | -- | -- |
| 270.25 | 0.771 | 9.88 | -0.739 | 0.771 | -- | -0.251 | -- | -6.48 | 15.2 | -- | -- | -- | -- |
| 270.43 | 0.77 | 9.88 | -0.744 | 0.772 | -- | -- | -- | -6.48 | 15.3 | -- | -- | -- | -- |
| 234.03 | 0.712 | 9.93 | -0.597 | -- | -1.5 | -- | -- | -6.73 | -- | 90.65 | 166 | -- | -- |
| 238.94 | 0.72 | 9.91 | -- | 0.289 | -1.62 | -- | -- | -6.66 | 11.9 | 91.53 | 189 | -- | -- |
| 304.11 | 0.815 | 9.88 | -0.777 | -- | -- | -- | -- | -6.5 | -- | -- | -- | -- | -- |
| 285.03 | 0.79 | 9.86 | -- | 0.787 | -- | -- | -- | -6.4 | 15.3 | -- | -- | -- | -- |
| 243.28 | 0.726 | 9.92 | -- | -- | -1.57 | -- | -- | -6.68 | -- | 90.63 | 169 | -- | -- |
| 320.04 | 0.835 | 9.86 | -- | -- | -- | -- | -- | -6.41 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.17 | humidity | 90 | 270 | > th | dose dependent | sin | 13 | NA |
| 4 | 217.91 | humidity | 90 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 6 | 218.44 | humidity | 90 | 90 | > th | dose dependent | rect. | 18 | 16 |
| 20 | 219.37 | humidity | 90 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 45 | 219.96 | humidity | 90 | 90 | > th | dose dependent | rect. | 18 | 20 |
| 60 | 220.20 | humidity | 90 | 90 | > th | dose dependent | rect. | 13 | 21 |
| 124 | 220.91 | humidity | 90 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 156 | 221.61 | humidity | 90 | 90 | > th | dose dependent | no | NA | NA |
| 235 | 222.74 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 7 |
| 236 | 222.74 | humidity | 90 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 240 | 222.82 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 291 | 223.13 | humidity | 90 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 292 | 223.14 | humidity | 90 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 324 | 223.70 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 4 |
| 374 | 224.80 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 4 |
| 429 | 226.05 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 495 | 227.45 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 519 | 227.84 | humidity | 90 | 270 | > th | dose independent | rect. | 18 | 13 |
| 524 | 227.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 525 | 227.88 | humidity | 90 | 270 | > th | dose independent | sin | 12 | NA |
| 576 | 228.15 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 621 | 228.46 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 639 | 228.90 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 8 |
| 663 | 229.32 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 684 | 229.56 | wind | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 699 | 229.71 | humidity | 90 | 270 | > th | dose independent | rect. | 11 | 20 |
| 740 | 230.08 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 769 | 230.28 | temperature | 25 | 720 | > th | dose independent | sin | 12 | NA |
| 774 | 230.32 | humidity | 90 | 270 | < th | dose independent | rect. | 21 | 10 |
| 793 | 230.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 862 | 231.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 916 | 231.73 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 23 |
| 946 | 232.06 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 984 | 232.31 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |