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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0569800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.1 (0.0378) R2 : 0.822
β1 : -0.851 (0.139) R2dD : 0.0161 R2D : -0.00205
β2 : 3.23 (0.0936) R2dC : 0.504 R2C : 0.649
β3 : 2.46 (0.138) R2dE : 0.137 R2E : 0.264
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.791 (0.081) R2dN8 : 0.047 R2N8 : 0.0192
σ : 0.706
deviance : 229.89
__
_____
C
peak time of C : 12.4
E
wheather : temperature
threshold : 6.335
memory length : 140
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.49
open length of G : 20.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
218.78 0.695 5.06 -0.62 3.16 2.27 -1.68 3 -0.669 12.4 9.183 108 7.02 20.1
226.55 0.701 5.08 -0.748 3.22 2.42 -1.11 -- -0.706 12.4 7.094 118 6.88 20.4
227.53 0.703 5.06 -0.623 3.27 2.35 -- 2.56 -0.677 12.4 7.443 151 6.83 20.2
229.89 0.706 5.1 -0.851 3.23 2.46 -- -- -0.791 12.4 6.335 140 6.49 20.5
522.19 1.07 5.26 -1.14 -- 3.95 -- -0.415 -1.27 -- 13.05 13 6.93 16.9
301.37 0.814 5.08 -0.564 3.95 -- -0.405 -- -0.594 13.7 -- -- -- --
302.02 0.814 5.08 -0.577 3.95 -- -- -- -0.596 13.7 -- -- -- --
367.74 0.897 5.1 -0.994 -- 3.85 -- -- -0.56 -- 8.746 7 7.94 13
248.08 0.734 5.07 -- 3.26 2.35 -- -- -0.67 12.5 2.657 133 6.47 20.7
1251.07 1.65 5.13 -0.737 -- -- -- -- -0.684 -- -- -- -- --
310.8 0.825 5.07 -- 3.96 -- -- -- -0.532 13.7 -- -- -- --
377.1 0.904 5.09 -- -- 3.49 -- -- -0.443 -- -4.469 17 7.78 13
1265.42 1.66 5.11 -- -- -- -- -- -0.602 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.31 temperature 10.0 90 > th dose dependent rect. 7 20
29 235.50 radiation 30.0 270 < th dose dependent rect. 15 15
36 236.74 radiation 10.0 270 < th dose independent rect. 16 14
87 243.08 humidity 50.0 270 > th dose independent rect. 16 14
91 243.65 radiation 10.0 90 < th dose independent rect. 3 23
101 244.21 wind 9.0 270 < th dose independent rect. 6 11
107 244.73 radiation 10.0 90 < th dose dependent rect. 3 23
112 244.99 humidity 70.0 90 > th dose independent rect. 17 14
115 245.12 precipitation 0.1 270 < th dose independent rect. 6 11
116 245.12 precipitation 0.1 270 < th dose dependent rect. 6 11
117 245.22 radiation 10.0 90 < th dose independent rect. 13 18
130 245.80 temperature 15.0 270 > th dose independent rect. 17 13
135 245.98 radiation 10.0 90 < th dose independent rect. 13 20
142 246.28 radiation 1.0 270 > th dose independent rect. 6 11
145 246.38 atmosphere 995.0 270 > th dose independent rect. 17 13
147 246.40 humidity 70.0 90 > th dose independent rect. 13 18
149 246.55 temperature 15.0 270 > th dose independent rect. 6 11
157 246.85 radiation 1.0 30 > th dose independent rect. 7 12
168 246.98 humidity 70.0 90 > th dose independent rect. 15 16
178 247.19 atmosphere 1015.0 270 < th dose independent rect. 6 11
194 247.74 temperature 30.0 270 < th dose independent rect. 1 18
199 248.14 radiation 20.0 10 < th dose dependent rect. 3 23
207 248.43 temperature 30.0 90 < th dose independent rect. 17 14
209 248.49 radiation 10.0 90 < th dose independent rect. 15 18
217 248.61 radiation 10.0 10 < th dose independent rect. 3 23
220 248.76 wind 9.0 270 < th dose independent rect. 17 13
227 248.86 radiation 1.0 270 > th dose independent sin 1 NA
231 248.97 radiation 10.0 270 < th dose dependent rect. 9 21
308 250.55 temperature 30.0 270 < th dose independent rect. 10 10
313 250.66 temperature 25.0 270 < th dose independent rect. 10 20
317 250.70 wind 7.0 270 < th dose independent rect. 5 22
347 251.08 radiation 10.0 10 < th dose independent rect. 4 18
356 251.22 radiation 10.0 90 < th dose independent rect. 9 22
357 251.24 radiation 1.0 270 > th dose independent rect. 17 23
367 251.46 temperature 25.0 270 < th dose independent sin 9 NA
390 251.90 radiation 40.0 90 < th dose dependent rect. 3 11
394 251.97 radiation 10.0 90 < th dose independent rect. 4 17
407 252.27 temperature 30.0 270 < th dose independent rect. 1 14
425 252.60 radiation 10.0 90 < th dose independent rect. 4 5
440 252.85 temperature 30.0 90 < th dose independent rect. 3 12
448 252.96 radiation 40.0 270 < th dose dependent rect. 1 12
459 253.07 wind 7.0 270 < th dose independent rect. 21 13
460 253.09 radiation 10.0 270 < th dose independent rect. 1 10
467 253.18 radiation 10.0 90 < th dose independent rect. 15 23
468 253.19 humidity 60.0 90 > th dose dependent rect. 3 18
481 253.42 radiation 10.0 90 < th dose independent rect. 4 10
483 253.50 humidity 60.0 270 > th dose independent rect. 11 9
485 253.53 radiation 10.0 90 < th dose dependent rect. 4 17
488 253.55 radiation 20.0 90 < th dose independent sin 10 NA
497 253.66 precipitation 0.1 270 < th dose independent rect. 21 13
498 253.66 precipitation 0.1 270 < th dose dependent rect. 21 13
500 253.67 radiation 10.0 10 < th dose independent rect. 13 19
538 254.07 precipitation 0.1 270 < th dose independent rect. 5 22
539 254.07 precipitation 0.1 270 < th dose dependent rect. 5 22
543 254.10 radiation 10.0 90 < th dose independent no NA NA
547 254.13 temperature 10.0 270 > th dose dependent rect. 6 11
550 254.15 radiation 20.0 10 < th dose dependent rect. 5 17
558 254.21 wind 7.0 90 < th dose independent rect. 7 21
562 254.27 radiation 20.0 10 < th dose dependent rect. 13 19
583 254.59 radiation 20.0 10 < th dose dependent rect. 10 22
613 254.83 atmosphere 995.0 270 > th dose dependent rect. 10 10
614 254.83 humidity 50.0 90 > th dose dependent rect. 13 18
617 254.88 temperature 30.0 10 < th dose independent rect. 12 19
640 255.04 atmosphere 995.0 270 > th dose independent rect. 6 10
643 255.04 radiation 40.0 10 < th dose dependent rect. 12 19
647 255.08 humidity 50.0 270 > th dose independent rect. 21 13
651 255.12 radiation 1.0 270 > th dose independent rect. 4 13
675 255.15 wind 9.0 720 < th dose independent rect. 15 18
687 255.21 radiation 10.0 10 < th dose independent rect. 10 22
690 255.23 temperature 10.0 270 > th dose independent rect. 10 11
691 255.23 temperature 10.0 270 > th dose independent rect. 21 13
692 255.23 atmosphere 995.0 270 > th dose independent rect. 21 13
696 255.24 radiation 20.0 90 < th dose dependent rect. 4 7
707 255.32 precipitation 0.1 270 < th dose independent rect. 16 14
708 255.32 precipitation 0.1 270 < th dose dependent rect. 16 14
716 255.37 radiation 10.0 270 < th dose dependent rect. 1 18
750 255.64 atmosphere 995.0 270 > th dose independent rect. 10 11
751 255.64 humidity 50.0 90 > th dose dependent rect. 17 14
757 255.68 radiation 10.0 720 < th dose independent rect. 1 6
773 255.83 radiation 10.0 10 < th dose independent rect. 4 6
783 255.88 precipitation 0.1 90 < th dose independent rect. 7 21
784 255.88 precipitation 0.1 90 < th dose dependent rect. 7 21
785 255.89 radiation 20.0 90 < th dose dependent rect. 4 5
791 255.92 humidity 50.0 90 > th dose dependent rect. 3 12
823 256.15 radiation 10.0 270 < th dose dependent rect. 22 23
827 256.19 radiation 40.0 270 < th dose independent rect. 10 20
833 256.24 radiation 10.0 10 < th dose independent rect. 4 10
839 256.27 radiation 20.0 90 < th dose dependent no NA NA
852 256.36 humidity 70.0 90 > th dose independent rect. 4 3
860 256.41 wind 9.0 720 < th dose independent rect. 5 13
871 256.45 temperature 25.0 270 < th dose independent rect. 3 2
882 256.48 radiation 10.0 270 < th dose dependent sin 4 NA
920 256.60 radiation 1.0 270 < th dose independent rect. 22 23
936 256.71 wind 9.0 10 < th dose independent rect. 7 11
967 256.83 radiation 10.0 10 < th dose independent no NA NA
971 256.87 radiation 10.0 10 < th dose independent rect. 15 23
973 256.91 radiation 1.0 270 < th dose independent sin 2 NA