Os03g0568900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Purple acid phosphatase.
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Os03g0568900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Purple acid phosphatase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.33 | 0.165 | 13.2 | 0.701 | 0.589 | 0.333 | 0.0735 | 0.129 | 0.445 | 21.7 | 19.4 | 1921 | -- | -- |
| 12.36 | 0.164 | 13.2 | 0.688 | 0.587 | 0.308 | 0.0619 | -- | 0.446 | 21.7 | 19.4 | 1920 | -- | -- |
| 12.35 | 0.164 | 13.2 | 0.699 | 0.589 | 0.336 | -- | 0.139 | 0.445 | 21.7 | 19.31 | 1920 | -- | -- |
| 12.38 | 0.164 | 13.2 | 0.683 | 0.59 | 0.309 | -- | -- | 0.441 | 21.7 | 19.4 | 1920 | -- | -- |
| 30.75 | 0.258 | 13.2 | 0.679 | -- | 0.488 | -- | 0.217 | 0.428 | -- | 19.5 | 791 | -- | -- |
| 13.91 | 0.175 | 13.2 | 0.81 | 0.6 | -- | 0.105 | -- | 0.498 | 21.7 | -- | -- | -- | -- |
| 13.95 | 0.175 | 13.2 | 0.806 | 0.6 | -- | -- | -- | 0.498 | 21.7 | -- | -- | -- | -- |
| 30.9 | 0.259 | 13.2 | 0.655 | -- | 0.44 | -- | -- | 0.425 | -- | 19.6 | 773 | -- | -- |
| 14.98 | 0.18 | 13.2 | -- | 0.599 | 0.661 | -- | -- | 0.264 | 21.7 | 17.9 | 47520 | -- | -- |
| 35.31 | 0.278 | 13.2 | 0.812 | -- | -- | -- | -- | 0.497 | -- | -- | -- | -- | -- |
| 31.08 | 0.261 | 13.2 | -- | 0.602 | -- | -- | -- | 0.409 | 21.8 | -- | -- | -- | -- |
| 35.89 | 0.279 | 13.2 | -- | -- | 0.654 | -- | -- | 0.253 | -- | 18.3 | 47520 | -- | -- |
| 52.69 | 0.339 | 13.2 | -- | -- | -- | -- | -- | 0.407 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.60 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 2 | 11.62 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 4 | 11.66 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 6 | 11.68 | atmosphere | 1005.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 10 | 11.70 | atmosphere | 1005.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 17 | 11.73 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 43 | 11.81 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 57 | 11.85 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 157 | 12.05 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 23 | 2 |
| 164 | 12.06 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 5 |
| 174 | 12.07 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 6 |
| 185 | 12.08 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 7 |
| 193 | 12.09 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 23 | 13 |
| 206 | 12.10 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 260 | 12.14 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 13 |
| 261 | 12.14 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 343 | 12.20 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 380 | 12.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 393 | 12.22 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 402 | 12.23 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 10 |
| 406 | 12.23 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 407 | 12.23 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 408 | 12.23 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 411 | 12.23 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 413 | 12.23 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 472 | 12.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 495 | 12.28 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 498 | 12.28 | temperature | 20.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 538 | 12.30 | humidity | 90.0 | 10 | < th | dose independent | rect. | 23 | 13 |
| 665 | 12.36 | atmosphere | 1005.0 | 270 | > th | dose independent | sin | 8 | NA |
| 667 | 12.36 | humidity | 90.0 | 30 | > th | dose independent | rect. | 1 | 9 |
| 677 | 12.36 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 705 | 12.37 | humidity | 70.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 738 | 12.38 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 12 | NA |
| 743 | 12.38 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 4 | 12 |
| 762 | 12.38 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 786 | 12.39 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 12 | 16 |
| 801 | 12.40 | atmosphere | 1005.0 | 30 | > th | dose independent | sin | 6 | NA |
| 808 | 12.40 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 9 |
| 826 | 12.40 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 860 | 12.41 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 10 |
| 862 | 12.41 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 11 |
| 934 | 12.43 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 21 | 15 |
| 943 | 12.43 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 946 | 12.43 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 21 | 15 |