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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0568800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0331) R2 : 0.317
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.11 (0.293) R2dE : 0.302 R2E : 0.312
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.117 (0.0704) R2dN8 : 0.00547 R2N8 : 0.0153
σ : 0.621
deviance : 177.85
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.26
memory length : 1490
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.09
open length of G : 0.625

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
155.43 0.586 3.47 0.454 0.117 2.32 1.23 5.05 -0.0886 15.3 90.94 1392 2.91 0.783
169 0.605 3.47 0.448 0.182 2.86 0.944 -- -0.0631 15 90.49 1425 3.02 0.683
159.75 0.589 3.46 0.488 0.137 2.36 -- 4.91 -0.0587 14.3 91.14 1464 2.88 0.786
171.99 0.611 3.47 0.5 0.149 2.96 -- -- -0.0509 14.7 90.41 1423 3.04 0.683
160.25 0.59 3.47 0.496 -- 2.77 -- 5.66 -0.0649 -- 91.25 1481 2.87 0.817
241.8 0.729 3.5 0.544 0.131 -- 0.915 -- -0.209 13.6 -- -- -- --
244.63 0.732 3.5 0.572 0.158 -- -- -- -0.206 11.1 -- -- -- --
173.26 0.613 3.47 0.494 -- 2.94 -- -- -0.0542 -- 90.45 1418 3.05 0.68
177.99 0.621 3.48 -- 0.135 3.07 -- -- -0.112 14.3 90.19 1464 3.08 0.633
246.18 0.733 3.5 0.569 -- -- -- -- -0.207 -- -- -- -- --
253.26 0.744 3.51 -- 0.153 -- -- -- -0.269 10.8 -- -- -- --
177.85 0.621 3.48 -- -- 4.11 -- -- -0.117 -- 90.26 1490 3.09 0.625
254.71 0.745 3.52 -- -- -- -- -- -0.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.70 humidity 90 1440 < th dose dependent rect. 3 1
2 161.90 wind 5 4320 > th dose dependent rect. 20 2
9 164.42 wind 7 4320 < th dose independent rect. 19 3
13 165.51 humidity 70 1440 > th dose dependent rect. 3 1
17 165.94 wind 7 4320 > th dose independent rect. 19 3
18 165.95 wind 7 4320 < th dose independent rect. 19 6
24 166.39 atmosphere 995 14400 < th dose independent rect. 18 1
27 166.39 atmosphere 995 14400 < th dose dependent rect. 18 1
95 167.53 humidity 70 1440 > th dose dependent rect. 2 4
96 167.57 atmosphere 995 14400 > th dose independent rect. 16 2
109 167.76 wind 7 4320 > th dose independent rect. 19 6
110 167.76 humidity 90 1440 < th dose dependent rect. 23 8
215 169.05 humidity 80 1440 > th dose dependent rect. 5 1
223 169.21 atmosphere 995 14400 > th dose independent rect. 12 7
241 169.33 atmosphere 995 14400 > th dose independent rect. 8 11
296 170.04 humidity 90 1440 < th dose dependent rect. 2 5
353 170.62 humidity 90 1440 < th dose dependent rect. 23 5
383 171.23 wind 7 4320 < th dose independent rect. 8 1
384 171.24 humidity 90 1440 > th dose independent rect. 5 1
414 171.79 humidity 90 1440 < th dose independent rect. 1 5
456 172.61 humidity 90 1440 < th dose dependent rect. 5 1
462 172.85 humidity 90 1440 < th dose independent rect. 2 1
473 173.38 atmosphere 995 14400 < th dose independent rect. 3 13
490 173.46 atmosphere 995 14400 > th dose independent rect. 4 11
496 173.55 atmosphere 995 14400 > th dose independent rect. 2 14
504 173.63 wind 7 4320 > th dose independent rect. 8 1
523 173.78 atmosphere 995 14400 > th dose independent rect. 19 21
538 174.12 humidity 90 1440 < th dose independent rect. 5 1
560 174.59 atmosphere 995 14400 > th dose independent sin 4 NA
572 174.75 atmosphere 995 14400 < th dose dependent sin 1 NA
580 174.84 radiation 1 14400 < th dose dependent rect. 23 3
593 174.96 atmosphere 995 14400 < th dose independent sin 3 NA
621 175.31 atmosphere 995 14400 < th dose dependent rect. 4 18
731 176.00 radiation 1 14400 < th dose dependent rect. 19 7
735 176.04 atmosphere 995 14400 > th dose independent rect. 8 21
737 176.05 atmosphere 995 14400 > th dose independent rect. 10 19
756 176.07 atmosphere 995 14400 > th dose independent rect. 4 22
763 176.08 atmosphere 995 14400 > th dose independent no NA NA
779 176.08 atmosphere 995 14400 > th dose independent rect. 10 23
780 176.08 atmosphere 995 14400 > th dose independent rect. 14 23
888 176.36 atmosphere 995 14400 > th dose independent rect. 14 15
906 176.37 humidity 90 1440 < th dose dependent rect. 24 1
914 176.39 atmosphere 995 14400 > th dose independent rect. 14 19
928 176.46 atmosphere 995 14400 < th dose independent rect. 14 14
938 176.46 atmosphere 995 14400 < th dose independent rect. 1 22
980 176.48 atmosphere 995 14400 < th dose independent no NA NA