Os03g0568500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0136, Transmembrane family protein.
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Os03g0568500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0136, Transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.5 | 0.424 | 11.1 | 0.52 | 1.17 | -0.543 | -0.0105 | -0.39 | 0.24 | 0.884 | 56 | 1295 | -- | -- |
| 81.73 | 0.421 | 11.1 | 0.523 | 1.18 | -0.553 | -0.0461 | -- | 0.238 | 0.871 | 56 | 1294 | -- | -- |
| 81.5 | 0.42 | 11.1 | 0.521 | 1.17 | -0.543 | -- | -0.393 | 0.24 | 0.884 | 56 | 1295 | -- | -- |
| 81.7 | 0.421 | 11.1 | 0.535 | 1.18 | -0.582 | -- | -- | 0.236 | 0.884 | 56.53 | 1293 | -- | -- |
| 106.72 | 0.484 | 11.1 | 0.533 | -- | -0.765 | -- | 0.152 | 0.407 | -- | 73 | 8 | -- | -- |
| 92.36 | 0.451 | 11.1 | 0.418 | 1.1 | -- | -0.14 | -- | 0.348 | 0.835 | -- | -- | -- | -- |
| 92.44 | 0.45 | 11.1 | 0.424 | 1.1 | -- | -- | -- | 0.349 | 0.831 | -- | -- | -- | -- |
| 106.86 | 0.484 | 11.1 | 0.526 | -- | -0.764 | -- | -- | 0.405 | -- | 73 | 8 | -- | -- |
| 89.42 | 0.44 | 11.1 | -- | 1.19 | -0.508 | -- | -- | 0.244 | 0.906 | 56.91 | 1253 | -- | -- |
| 168.31 | 0.606 | 11.1 | 0.464 | -- | -- | -- | -- | 0.369 | -- | -- | -- | -- | -- |
| 97.17 | 0.461 | 11.1 | -- | 1.11 | -- | -- | -- | 0.302 | 0.848 | -- | -- | -- | -- |
| 114.16 | 0.499 | 11.1 | -- | -- | -0.753 | -- | -- | 0.346 | -- | 73 | 8 | -- | -- |
| 173.99 | 0.616 | 11.1 | -- | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.98 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 9 | 79.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 10 | 79.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 24 | 79.96 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 31 | 80.31 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 32 | 80.31 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 38 | 80.38 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 41 | 80.45 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 47 | 80.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 49 | 80.67 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 56 | 80.78 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 58 | 80.83 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 65 | 80.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 66 | 80.97 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 79 | 81.05 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 89 | 81.18 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 131 | 81.54 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 161 | 81.71 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 173 | 81.78 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 183 | 81.82 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 186 | 81.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 194 | 81.86 | wind | 7 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 201 | 81.88 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 213 | 81.92 | wind | 7 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 219 | 81.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 223 | 81.94 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 232 | 81.97 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 233 | 81.98 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 263 | 82.05 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 282 | 82.11 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 297 | 82.14 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 316 | 82.18 | humidity | 60 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 320 | 82.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 355 | 82.27 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 377 | 82.31 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 395 | 82.34 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 418 | 82.37 | wind | 1 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 419 | 82.37 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 433 | 82.41 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 437 | 82.42 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 447 | 82.45 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 453 | 82.46 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 473 | 82.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 494 | 82.51 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 509 | 82.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 543 | 82.58 | humidity | 70 | 270 | > th | dose independent | rect. | 12 | 19 |
| 550 | 82.59 | humidity | 60 | 720 | > th | dose independent | rect. | 15 | 16 |
| 556 | 82.59 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 559 | 82.59 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 561 | 82.60 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 566 | 82.61 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 604 | 82.67 | wind | 7 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 612 | 82.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 616 | 82.69 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 638 | 82.70 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 640 | 82.71 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 22 |
| 643 | 82.71 | wind | 5 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 659 | 82.73 | wind | 5 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 676 | 82.75 | humidity | 60 | 720 | > th | dose independent | rect. | 14 | 9 |
| 694 | 82.77 | wind | 5 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 716 | 82.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 728 | 82.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 744 | 82.82 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 746 | 82.82 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 758 | 82.83 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 773 | 82.84 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 782 | 82.85 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 10 |
| 796 | 82.86 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 20 |
| 798 | 82.87 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 799 | 82.87 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 12 |
| 809 | 82.88 | wind | 1 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 819 | 82.89 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 821 | 82.89 | wind | 7 | 720 | < th | dose independent | rect. | 21 | 22 |
| 822 | 82.89 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 844 | 82.91 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 937 | 82.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 938 | 82.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 949 | 82.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 952 | 82.98 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 966 | 82.98 | humidity | 70 | 720 | < th | dose dependent | rect. | 15 | 18 |
| 973 | 82.99 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 999 | 83.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 2 |