Os03g0567600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF563 family protein.
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Os03g0567600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF563 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.88 | 0.252 | 12.5 | 0.0225 | 1.1 | -0.451 | -0.404 | 0.578 | 0.316 | 22 | 1003 | 101 | -- | -- |
| 29.36 | 0.252 | 12.5 | 0.0326 | 1.1 | -0.454 | -0.425 | -- | 0.312 | 22 | 1003 | 114 | -- | -- |
| 29.51 | 0.253 | 12.5 | 0.0321 | 1.1 | -0.46 | -- | 0.613 | 0.317 | 22 | 1003 | 92 | -- | -- |
| 30.07 | 0.255 | 12.5 | 0.051 | 1.1 | -0.47 | -- | -- | 0.314 | 22 | 1004 | 98 | -- | -- |
| 98.78 | 0.463 | 12.4 | 0.0133 | -- | -0.782 | -- | 0.73 | 0.379 | -- | 1005 | 355 | -- | -- |
| 32.69 | 0.268 | 12.5 | 0.0483 | 1.13 | -- | -0.465 | -- | 0.229 | 21.9 | -- | -- | -- | -- |
| 33.53 | 0.271 | 12.5 | 0.0664 | 1.13 | -- | -- | -- | 0.23 | 21.9 | -- | -- | -- | -- |
| 99.56 | 0.465 | 12.4 | 0.036 | -- | -0.792 | -- | -- | 0.372 | -- | 1005 | 370 | -- | -- |
| 30.14 | 0.256 | 12.5 | -- | 1.1 | -0.474 | -- | -- | 0.309 | 22 | 1004 | 100 | -- | -- |
| 110 | 0.49 | 12.4 | 0.0795 | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
| 33.64 | 0.271 | 12.5 | -- | 1.13 | -- | -- | -- | 0.223 | 21.9 | -- | -- | -- | -- |
| 99.6 | 0.465 | 12.4 | -- | -- | -0.793 | -- | -- | 0.367 | -- | 1005 | 373 | -- | -- |
| 110.16 | 0.49 | 12.4 | -- | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.73 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 13 | 27.01 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 4 |
| 22 | 27.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 29 | 27.56 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 43 | 27.73 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 61 | 27.90 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 6 |
| 64 | 27.91 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 9 |
| 79 | 27.97 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 19 |
| 87 | 28.00 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 98 | 28.04 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 101 | 28.04 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 103 | 28.06 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 2 |
| 132 | 28.19 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 133 | 28.20 | temperature | 20.0 | 720 | > th | dose independent | sin | 12 | NA |
| 153 | 28.25 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 160 | 28.27 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 18 | 21 |
| 163 | 28.28 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 168 | 28.31 | humidity | 80.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 192 | 28.38 | temperature | 20.0 | 720 | < th | dose independent | sin | 11 | NA |
| 231 | 28.48 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 237 | 28.49 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 249 | 28.52 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 255 | 28.54 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 20 |
| 277 | 28.57 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 286 | 28.59 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 9 | 17 |
| 295 | 28.61 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 299 | 28.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 305 | 28.62 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 307 | 28.62 | radiation | 20.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 312 | 28.62 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 317 | 28.63 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 334 | 28.65 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 351 | 28.67 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 363 | 28.67 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 13 | 20 |
| 365 | 28.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 374 | 28.69 | wind | 1.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 391 | 28.72 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 397 | 28.73 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 428 | 28.77 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 10 | 13 |
| 453 | 28.80 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 455 | 28.81 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 464 | 28.82 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 470 | 28.82 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 473 | 28.83 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 479 | 28.83 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 495 | 28.84 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 507 | 28.85 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 516 | 28.86 | atmosphere | 1005.0 | 90 | > th | dose dependent | sin | 19 | NA |
| 517 | 28.86 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 558 | 28.89 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 572 | 28.89 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 618 | 28.92 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 652 | 28.94 | wind | 1.0 | 4320 | > th | dose independent | rect. | 10 | 13 |
| 675 | 28.95 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 691 | 28.96 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 718 | 28.97 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 748 | 28.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 749 | 28.99 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 750 | 28.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 752 | 28.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 759 | 28.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 783 | 29.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 786 | 29.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 788 | 29.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 15 |
| 794 | 29.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 824 | 29.02 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 9 | 15 |
| 827 | 29.02 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 829 | 29.02 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 13 | 10 |
| 869 | 29.04 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 883 | 29.04 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 945 | 29.07 | wind | 1.0 | 4320 | < th | dose independent | rect. | 10 | 13 |
| 980 | 29.08 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 996 | 29.08 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 3 | 23 |