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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0565900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1723 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.27 (0.0408) R2 : 0.195
β1 : 1.15 (0.149) R2dD : 0.109 R2D : 0.074
β2 : 0.719 (0.107) R2dC : 0.0807 R2C : 0.0638
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.388 (0.0872) R2dN8 : 0.0469 R2N8 : 0.00939
σ : 0.768
deviance : 268.66
__
_____
C
peak time of C : 17.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254 0.749 4.22 1.33 0.732 -1.13 -0.677 3.27 0.31 17.6 0.2165 3882 -- --
261.66 0.753 4.28 1.3 0.705 -0.566 -0.599 -- 0.316 17.6 0.09518 3989 -- --
253.54 0.742 4.21 1.51 0.722 -1.71 -- 5.08 0.278 17.8 0.4159 4310 -- --
262.78 0.755 4.29 1.32 0.709 -0.533 -- -- 0.328 17.6 0.03846 4095 -- --
278.39 0.777 4.04 2.02 -- -3.41 -- 11.4 0.257 -- 0.4736 4009 -- --
267.73 0.767 4.27 1.15 0.723 -- -0.613 -- 0.391 17.7 -- -- -- --
268.66 0.768 4.27 1.15 0.719 -- -- -- 0.388 17.6 -- -- -- --
289.2 0.792 4.27 1.29 -- -0.562 -- -- 0.324 -- -0.01695 3989 -- --
300.6 0.808 4.32 -- 0.679 -0.298 -- -- 0.176 17.8 -0.3154 14162 -- --
295.49 0.803 4.26 1.13 -- -- -- -- 0.371 -- -- -- -- --
303.57 0.815 4.3 -- 0.701 -- -- -- 0.26 17.7 -- -- -- --
325.99 0.841 4.3 -- -- -0.324 -- -- 0.17 -- -0.7608 14000 -- --
329.05 0.847 4.29 -- -- -- -- -- 0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 241.91 temperature 30 10 < th dose independent rect. 11 1
3 243.37 atmosphere 1000 14400 < th dose independent rect. 21 12
5 243.38 atmosphere 1000 14400 > th dose independent rect. 22 10
6 243.38 atmosphere 1000 14400 < th dose independent rect. 22 10
8 243.38 atmosphere 1000 14400 > th dose independent rect. 21 12
12 243.40 atmosphere 1000 14400 < th dose independent rect. 3 2
31 243.49 atmosphere 1000 14400 > th dose independent rect. 3 2
32 243.49 atmosphere 1000 14400 > th dose independent rect. 2 4
33 243.49 atmosphere 1000 14400 < th dose independent rect. 2 4
74 243.64 atmosphere 1000 14400 < th dose independent sin 8 NA
84 243.71 atmosphere 1000 14400 > th dose independent sin 8 NA
235 244.61 atmosphere 1000 14400 < th dose independent rect. 1 1
236 244.61 atmosphere 1000 14400 > th dose independent rect. 24 2
238 244.62 temperature 30 10 < th dose independent rect. 11 3
239 244.62 atmosphere 1000 14400 < th dose dependent rect. 12 13
282 244.74 atmosphere 1000 14400 < th dose dependent sin 18 NA
324 244.83 atmosphere 1000 14400 < th dose dependent rect. 19 1
441 245.04 atmosphere 1000 14400 < th dose dependent rect. 15 1
516 245.14 atmosphere 1000 14400 < th dose independent no NA NA
551 245.18 atmosphere 1000 14400 < th dose independent rect. 11 23
559 245.19 atmosphere 1000 14400 < th dose independent rect. 3 23
577 245.21 atmosphere 1000 14400 < th dose independent rect. 1 23
579 245.21 atmosphere 1000 14400 < th dose independent rect. 9 23
588 245.22 atmosphere 1000 14400 < th dose independent rect. 7 23
590 245.22 atmosphere 1000 14400 < th dose dependent no NA NA
593 245.23 atmosphere 1000 14400 > th dose independent no NA NA
598 245.23 atmosphere 1000 14400 < th dose dependent rect. 23 23
627 245.26 atmosphere 1000 14400 < th dose dependent rect. 20 23
637 245.28 atmosphere 1000 14400 > th dose independent rect. 3 23
638 245.28 atmosphere 1000 14400 > th dose independent rect. 11 23
656 245.29 atmosphere 1000 14400 < th dose dependent rect. 17 23
662 245.30 atmosphere 1000 14400 > th dose independent rect. 1 23
664 245.30 atmosphere 1000 14400 > th dose independent rect. 9 23
686 245.32 atmosphere 1000 14400 > th dose independent rect. 7 23
877 245.59 atmosphere 1000 14400 < th dose dependent rect. 12 1
988 245.78 atmosphere 995 30 > th dose dependent rect. 11 1