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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0565300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1723 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0146) R2 : 0.0387
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.132 (0.0308) R2dN8 : 0.05 R2N8 : 0.0387
σ : 0.276
deviance : 34.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.99 0.262 3.17 0.459 0.0882 0.136 -0.218 1.06 0.199 6.85 25.6 7462 -- --
31.93 0.263 3.2 0.156 0.104 0.181 -0.189 -- 0.152 6.71 32 6523 -- --
31.09 0.26 3.17 0.455 0.0884 0.137 -- 1.06 0.2 7.6 25.6 7472 -- --
31.74 0.262 3.19 0.137 0.105 0.207 -- -- 0.171 7.37 29.65 4852 -- --
31.51 0.261 3.16 0.464 -- 0.135 -- 1.08 0.206 -- 25.57 7436 -- --
33.29 0.27 3.2 0.197 0.0905 -- -0.224 -- 0.151 6.61 -- -- -- --
33.4 0.271 3.2 0.194 0.09 -- -- -- 0.152 7.1 -- -- -- --
32.28 0.265 3.2 0.141 -- 0.202 -- -- 0.177 -- 29.78 4578 -- --
32.2 0.264 3.2 -- 0.106 0.231 -- -- 0.155 7.48 29.6 4836 -- --
33.83 0.272 3.2 0.196 -- -- -- -- 0.154 -- -- -- -- --
34.4 0.274 3.2 -- 0.0921 -- -- -- 0.131 6.97 -- -- -- --
32.77 0.267 3.2 -- -- 0.229 -- -- 0.164 -- 29.76 4568 -- --
34.84 0.276 3.21 -- -- -- -- -- 0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.00 temperature 25 30 > th dose dependent rect. 9 23
2 31.04 temperature 25 30 > th dose dependent rect. 13 23
6 31.13 radiation 20 720 > th dose independent rect. 15 17
7 31.13 temperature 25 90 > th dose dependent rect. 19 23
8 31.14 temperature 15 270 > th dose dependent rect. 6 19
9 31.14 temperature 25 30 > th dose dependent rect. 7 19
11 31.14 temperature 25 30 > th dose dependent rect. 7 22
12 31.14 temperature 25 270 > th dose dependent rect. 17 22
19 31.16 temperature 25 30 > th dose dependent rect. 23 23
20 31.17 temperature 20 4320 > th dose dependent rect. 8 1
21 31.17 temperature 25 720 > th dose dependent rect. 6 2
23 31.17 temperature 25 30 > th dose dependent rect. 9 17
27 31.17 temperature 25 30 > th dose dependent rect. 9 20
39 31.18 temperature 25 30 > th dose dependent no NA NA
41 31.18 temperature 20 4320 > th dose dependent rect. 8 3
71 31.20 temperature 25 30 > th dose dependent rect. 15 23
74 31.21 radiation 30 720 > th dose independent rect. 14 19
86 31.22 temperature 10 4320 > th dose dependent rect. 8 1
88 31.22 temperature 10 4320 > th dose dependent rect. 10 1
90 31.22 temperature 10 4320 > th dose dependent rect. 8 3
112 31.24 temperature 30 4320 < th dose dependent rect. 8 1
116 31.24 temperature 25 30 > th dose dependent rect. 7 15
118 31.24 radiation 10 720 > th dose dependent rect. 15 17
120 31.24 radiation 30 720 > th dose dependent rect. 15 18
130 31.25 temperature 25 720 > th dose dependent sin 6 NA
158 31.26 temperature 25 30 > th dose dependent rect. 9 13
192 31.28 temperature 25 1440 > th dose independent rect. 4 5
198 31.28 radiation 30 720 < th dose dependent rect. 16 16
220 31.28 temperature 10 30 > th dose dependent rect. 9 23
237 31.30 temperature 25 4320 > th dose independent rect. 17 1
268 31.31 temperature 25 1440 < th dose independent rect. 4 5
303 31.33 temperature 30 270 < th dose independent rect. 10 11
313 31.33 temperature 25 720 > th dose dependent rect. 23 17
323 31.34 temperature 25 4320 < th dose independent rect. 17 1
325 31.34 humidity 90 720 < th dose independent rect. 6 10
334 31.34 radiation 10 720 > th dose dependent rect. 17 14
354 31.34 temperature 25 30 > th dose dependent rect. 11 23
359 31.35 radiation 10 720 > th dose dependent rect. 6 1
376 31.35 temperature 25 4320 > th dose dependent rect. 2 10
377 31.35 temperature 25 720 > th dose dependent rect. 6 10
383 31.35 temperature 25 720 > th dose dependent rect. 23 12
422 31.37 temperature 25 4320 > th dose independent rect. 3 8
431 31.37 temperature 25 720 > th dose dependent rect. 1 10
432 31.37 temperature 10 720 > th dose dependent rect. 6 10
457 31.38 humidity 90 720 < th dose independent rect. 6 2
460 31.38 radiation 10 720 < th dose independent rect. 16 15
515 31.39 temperature 25 1440 > th dose independent rect. 7 2
550 31.40 temperature 25 4320 < th dose independent rect. 3 8
638 31.42 temperature 25 30 > th dose dependent sin 21 NA
639 31.42 temperature 25 4320 > th dose dependent sin 5 NA
700 31.43 temperature 10 720 > th dose dependent rect. 5 12
730 31.44 temperature 25 14400 < th dose independent rect. 15 6
814 31.45 radiation 1 720 > th dose dependent sin 12 NA
815 31.45 radiation 1 4320 > th dose dependent rect. 8 1
816 31.45 radiation 40 4320 < th dose dependent rect. 8 1
888 31.46 radiation 40 720 < th dose dependent sin 12 NA
889 31.46 humidity 90 720 < th dose dependent rect. 7 1
939 31.47 temperature 25 14400 < th dose independent sin 18 NA
950 31.47 temperature 25 14400 > th dose independent rect. 9 13
955 31.47 radiation 10 720 > th dose independent rect. 17 14
962 31.47 temperature 20 14400 > th dose dependent rect. 17 1