Os03g0565100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : OST3/OST6 family protein.
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Os03g0565100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : OST3/OST6 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.51 | 0.213 | 10.6 | 0.645 | 0.082 | 0.485 | -0.138 | 0.154 | 0.124 | 23.2 | 24.59 | 10 | -- | -- |
| 20.52 | 0.211 | 10.6 | 0.631 | 0.081 | 0.491 | -0.163 | -- | 0.121 | 23.1 | 24.65 | 10 | -- | -- |
| 20.57 | 0.211 | 10.6 | 0.672 | 0.0835 | 0.476 | -- | 0.346 | 0.123 | 23.6 | 24.21 | 10 | -- | -- |
| 20.62 | 0.211 | 10.6 | 0.629 | 0.0876 | 0.51 | -- | -- | 0.118 | 23.6 | 24.62 | 10 | -- | -- |
| 20.9 | 0.213 | 10.6 | 0.692 | -- | 0.415 | -- | 0.442 | 0.131 | -- | 24.2 | 23 | -- | -- |
| 24.47 | 0.232 | 10.6 | 0.708 | 0.154 | -- | 0.228 | -- | 0.168 | 16.1 | -- | -- | -- | -- |
| 24.6 | 0.232 | 10.6 | 0.71 | 0.158 | -- | -- | -- | 0.169 | 16.5 | -- | -- | -- | -- |
| 20.98 | 0.213 | 10.6 | 0.64 | -- | 0.454 | -- | -- | 0.126 | -- | 24.76 | 19 | -- | -- |
| 30.31 | 0.256 | 10.7 | -- | 0.155 | 0.686 | -- | -- | 0.00474 | 0.751 | 22.46 | 19 | -- | -- |
| 25.93 | 0.238 | 10.6 | 0.704 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 37.88 | 0.288 | 10.6 | -- | 0.145 | -- | -- | -- | 0.0898 | 16.6 | -- | -- | -- | -- |
| 30.5 | 0.257 | 10.7 | -- | -- | 0.715 | -- | -- | 0.00525 | -- | 14.92 | 245 | -- | -- |
| 39 | 0.291 | 10.6 | -- | -- | -- | -- | -- | 0.0866 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.42 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 19.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 19 | 19.60 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 36 | 19.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 37 | 19.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 38 | 19.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 39 | 19.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 41 | 19.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 42 | 19.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 43 | 19.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 49 | 19.74 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 52 | 19.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 54 | 19.75 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 84 | 19.97 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 98 | 20.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 101 | 20.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 142 | 20.12 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 151 | 20.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 154 | 20.14 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 161 | 20.15 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 165 | 20.16 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 166 | 20.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 192 | 20.20 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 12 |
| 205 | 20.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 222 | 20.24 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 236 | 20.27 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 239 | 20.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 249 | 20.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 277 | 20.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 280 | 20.31 | temperature | 30 | 720 | < th | dose independent | sin | 6 | NA |
| 305 | 20.33 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 12 |
| 315 | 20.34 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 339 | 20.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 376 | 20.36 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 388 | 20.37 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 397 | 20.38 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 421 | 20.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 485 | 20.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 526 | 20.44 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 560 | 20.47 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 580 | 20.47 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 594 | 20.49 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 8 |
| 595 | 20.49 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 8 |
| 608 | 20.50 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 609 | 20.50 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 610 | 20.50 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 625 | 20.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 626 | 20.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 691 | 20.54 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 708 | 20.54 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 752 | 20.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 837 | 20.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 907 | 20.59 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 925 | 20.60 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 1 |