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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0564600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF26 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.1 (0.0506) R2 : 0.415
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.99 (0.124) R2dC : 0.334 R2C : 0.296
β3 : 1.92 (0.202) R2dE : 0.116 R2E : 0.0782
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.194 (0.107) R2dN8 : 0.0057 R2N8 : -0.000936
σ : 0.948
deviance : 414.42
__
_____
C
peak time of C : 21.7
E
wheather : radiation
threshold : 10
memory length : 55
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 19.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.01 0.937 4.07 0.458 1.91 1.73 -0.365 3.09 0.249 22 10.36 33 19.2 --
409.6 0.943 4.08 0.404 1.96 1.83 -0.375 -- 0.244 21.9 11.21 36 19.4 --
398.52 0.93 4.07 0.475 1.92 1.74 -- 3.07 0.25 21.9 10.52 32 19.3 --
410.1 0.943 4.08 0.42 1.95 1.83 -- -- 0.25 21.9 11.05 36 19.4 --
578.03 1.12 4.03 0.471 -- 2.18 -- 2.28 0.244 -- 5.32 34 17.6 --
471.57 1.02 4.1 0.448 1.92 -- -0.305 -- 0.165 22.8 -- -- -- --
471.96 1.02 4.1 0.461 1.92 -- -- -- 0.166 22.8 -- -- -- --
585.49 1.13 4.03 0.489 -- 2.23 -- -- 0.245 -- 6.061 12 17.1 --
414.42 0.948 4.1 -- 1.99 1.92 -- -- 0.194 21.7 10 55 19.7 --
700.03 1.24 4.05 0.5 -- -- -- -- 0.178 -- -- -- -- --
477.55 1.02 4.11 -- 1.92 -- -- -- 0.114 22.8 -- -- -- --
591.07 1.13 4.04 -- -- 2.23 -- -- 0.192 -- 6.29 8 17 --
706.63 1.24 4.06 -- -- -- -- -- 0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 389.14 atmosphere 995.0 90 > th dose independent rect. 3 16
2 391.06 radiation 10.0 90 < th dose dependent rect. 3 16
3 391.96 radiation 10.0 90 < th dose dependent rect. 3 14
4 392.92 wind 9.0 90 < th dose independent rect. 3 16
5 393.05 temperature 10.0 90 > th dose independent rect. 19 8
6 393.05 temperature 30.0 90 < th dose independent rect. 19 8
7 393.05 humidity 50.0 90 > th dose independent rect. 19 8
9 393.05 atmosphere 995.0 90 > th dose independent rect. 19 8
10 393.05 radiation 1.0 90 < th dose independent rect. 19 8
15 393.05 temperature 10.0 90 > th dose independent rect. 3 16
16 393.05 atmosphere 1015.0 90 < th dose independent rect. 3 16
17 393.05 radiation 1.0 90 < th dose dependent rect. 19 8
22 393.07 wind 9.0 90 < th dose independent rect. 19 8
25 393.17 radiation 20.0 10 < th dose dependent rect. 4 15
27 393.50 precipitation 0.1 90 < th dose independent rect. 19 8
28 393.50 precipitation 0.1 90 < th dose dependent rect. 19 8
35 394.70 precipitation 0.1 90 < th dose independent rect. 3 16
36 394.70 precipitation 0.1 90 < th dose dependent rect. 3 16
40 395.39 wind 3.0 270 < th dose dependent rect. 24 6
45 396.61 temperature 20.0 270 > th dose independent rect. 13 16
51 397.03 radiation 10.0 10 < th dose independent rect. 3 18
61 398.28 radiation 10.0 30 < th dose dependent sin 1 NA
70 398.97 atmosphere 995.0 270 > th dose independent rect. 1 16
72 399.12 wind 3.0 30 < th dose dependent rect. 3 4
76 399.43 radiation 10.0 270 < th dose dependent rect. 17 8
88 399.99 radiation 40.0 10 < th dose dependent rect. 13 18
91 400.03 wind 3.0 270 < th dose independent rect. 24 6
96 400.28 humidity 50.0 270 > th dose independent rect. 17 8
98 400.39 radiation 1.0 270 < th dose independent rect. 17 8
99 400.46 wind 9.0 270 < th dose independent rect. 1 16
105 400.59 radiation 20.0 30 < th dose independent rect. 13 18
111 400.73 humidity 90.0 270 > th dose independent rect. 24 5
112 400.79 temperature 15.0 270 > th dose independent rect. 1 16
113 400.80 temperature 10.0 270 > th dose independent rect. 17 8
118 400.80 atmosphere 1015.0 270 < th dose independent rect. 1 16
121 401.00 precipitation 0.1 270 < th dose independent rect. 1 17
123 401.00 precipitation 0.1 270 < th dose dependent rect. 1 17
124 401.02 humidity 80.0 270 > th dose dependent rect. 24 5
128 401.12 temperature 10.0 270 > th dose dependent rect. 24 6
129 401.14 wind 9.0 270 < th dose independent rect. 17 8
138 401.57 humidity 80.0 30 > th dose dependent rect. 3 14
191 402.71 temperature 30.0 90 < th dose dependent rect. 19 8
197 402.82 temperature 15.0 90 > th dose dependent rect. 3 3
204 403.03 humidity 80.0 90 > th dose dependent rect. 3 4
212 403.23 wind 3.0 270 < th dose independent rect. 1 4
246 403.89 radiation 1.0 270 < th dose dependent rect. 5 20
251 403.94 radiation 20.0 90 < th dose dependent rect. 3 6
262 404.14 radiation 10.0 270 < th dose dependent rect. 24 16
269 404.30 radiation 20.0 90 < th dose dependent rect. 3 4
272 404.34 wind 3.0 270 < th dose dependent rect. 3 1
274 404.40 humidity 90.0 90 < th dose independent rect. 21 18
280 404.49 temperature 15.0 10 > th dose dependent rect. 3 4
296 404.61 wind 3.0 30 < th dose dependent rect. 3 6
298 404.61 radiation 1.0 270 < th dose dependent rect. 9 16
305 404.68 atmosphere 995.0 270 > th dose dependent rect. 12 6
308 404.71 radiation 20.0 10 < th dose dependent rect. 3 23
312 404.77 wind 1.0 270 > th dose independent rect. 18 7
321 404.93 wind 9.0 270 < th dose independent rect. 13 16
346 405.17 temperature 10.0 270 > th dose dependent rect. 1 4
349 405.19 temperature 30.0 10 < th dose dependent rect. 19 9
352 405.20 temperature 10.0 10 > th dose dependent rect. 16 15
356 405.22 temperature 10.0 270 > th dose independent rect. 5 8
357 405.22 atmosphere 995.0 270 > th dose independent rect. 5 8
358 405.22 atmosphere 1015.0 270 < th dose independent rect. 5 8
360 405.23 radiation 10.0 90 < th dose independent rect. 3 4
361 405.26 precipitation 0.1 270 < th dose independent rect. 5 8
362 405.26 precipitation 0.1 270 < th dose dependent rect. 5 8
375 405.48 humidity 50.0 1440 < th dose independent rect. 16 1
377 405.51 humidity 50.0 1440 < th dose dependent rect. 16 1
384 405.56 temperature 15.0 270 > th dose dependent rect. 3 1
391 405.65 wind 9.0 270 < th dose independent rect. 5 8
423 406.05 humidity 90.0 90 < th dose independent rect. 1 14
426 406.07 humidity 90.0 90 > th dose dependent rect. 1 18
438 406.13 wind 9.0 90 < th dose dependent rect. 3 16
442 406.14 wind 9.0 90 < th dose dependent rect. 19 8
489 406.48 radiation 20.0 10 < th dose dependent rect. 24 21
492 406.51 temperature 20.0 10 > th dose independent rect. 3 4
511 406.80 temperature 30.0 720 > th dose dependent rect. 18 1
532 406.88 wind 3.0 90 < th dose independent rect. 3 3
541 406.96 radiation 10.0 10 < th dose independent rect. 24 21
553 407.10 radiation 30.0 10 < th dose dependent rect. 3 7
562 407.18 radiation 20.0 270 < th dose dependent rect. 24 7
565 407.19 precipitation 0.1 270 < th dose independent rect. 13 16
567 407.19 precipitation 0.1 270 < th dose dependent rect. 13 16
588 407.40 radiation 1.0 270 < th dose independent rect. 9 16
591 407.42 atmosphere 1010.0 90 < th dose independent rect. 3 4
640 407.81 radiation 10.0 270 < th dose independent rect. 24 7
641 407.84 atmosphere 1015.0 90 < th dose independent rect. 19 8
646 407.90 humidity 50.0 1440 > th dose independent rect. 16 1
655 408.02 humidity 90.0 90 > th dose independent rect. 3 2
667 408.16 temperature 10.0 270 > th dose dependent rect. 13 16
687 408.39 humidity 90.0 90 > th dose independent rect. 3 4
727 408.73 atmosphere 995.0 270 > th dose independent rect. 13 16
736 408.77 temperature 25.0 270 < th dose independent rect. 1 4
781 409.06 wind 9.0 90 < th dose independent rect. 3 3
782 409.06 temperature 10.0 90 > th dose independent rect. 3 3
784 409.06 temperature 30.0 90 < th dose independent rect. 3 3
785 409.06 humidity 50.0 90 > th dose independent rect. 3 3
788 409.06 atmosphere 995.0 90 > th dose independent rect. 3 3
794 409.06 temperature 10.0 90 > th dose independent rect. 6 21
823 409.23 precipitation 0.1 90 < th dose independent rect. 3 3
824 409.23 precipitation 0.1 90 < th dose dependent rect. 3 3
825 409.25 precipitation 0.1 270 < th dose independent rect. 24 6
826 409.25 precipitation 0.1 270 < th dose dependent rect. 24 6
838 409.33 temperature 15.0 270 > th dose independent rect. 24 6
840 409.34 wind 9.0 270 < th dose independent rect. 24 6
842 409.34 temperature 30.0 270 < th dose independent rect. 24 6
843 409.34 humidity 50.0 270 > th dose independent rect. 24 6
846 409.34 atmosphere 995.0 270 > th dose independent rect. 24 6
847 409.34 atmosphere 1015.0 270 < th dose independent rect. 24 6
851 409.34 temperature 10.0 270 > th dose independent rect. 6 18
928 409.62 radiation 10.0 90 < th dose independent rect. 3 12
963 409.80 atmosphere 1000.0 270 > th dose independent rect. 12 6
967 409.83 humidity 90.0 10 < th dose independent rect. 7 9