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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0563600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 56 precursor (EC 1.11.1.7) (Atperox P56) (ATP33).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0334) R2 : 0.00224
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0711 (0.0703) R2dN8 : 0.00289 R2N8 : 0.00224
σ : 0.629
deviance : 181.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.37 0.608 3.23 -0.969 0.247 0.754 0.0758 -3.24 -0.135 4.55 26.06 1184 -- --
169.87 0.607 3.13 -0.207 0.238 0.401 -0.0929 -- 0.037 3.87 26.3 1231 -- --
167.29 0.602 3.22 -0.934 0.256 0.77 -- -3.2 -0.144 4.89 25.71 1118 -- --
169.89 0.607 3.13 -0.214 0.239 0.403 -- -- 0.0362 3.95 26.23 1235 -- --
170.48 0.608 3.23 -0.953 -- 0.778 -- -3.05 -0.153 -- 25.49 1182 -- --
176.29 0.622 3.13 -0.0904 0.297 -- -0.0393 -- 0.0545 3.35 -- -- -- --
176.29 0.622 3.13 -0.0897 0.297 -- -- -- 0.0547 3.37 -- -- -- --
172.94 0.612 3.14 -0.222 -- 0.454 -- -- 0.032 -- 25.9 1221 -- --
170.97 0.609 3.12 -- 0.247 0.342 -- -- 0.0926 3.83 27.86 1243 -- --
181.26 0.629 3.13 -0.0771 -- -- -- -- 0.0626 -- -- -- -- --
176.51 0.621 3.13 -- 0.295 -- -- -- 0.0647 3.38 -- -- -- --
174.14 0.615 3.13 -- -- 0.41 -- -- 0.0632 -- 26.12 1221 -- --
181.42 0.629 3.13 -- -- -- -- -- 0.0711 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.95 wind 7 1440 < th dose independent rect. 5 1
3 161.95 temperature 10 1440 > th dose independent rect. 5 1
6 161.95 temperature 30 1440 < th dose independent rect. 5 1
10 161.95 humidity 50 1440 > th dose independent rect. 5 1
19 161.95 atmosphere 995 1440 > th dose independent rect. 5 1
20 161.95 atmosphere 1015 1440 < th dose independent rect. 5 1
21 161.95 radiation 20 1440 < th dose independent rect. 5 1
30 161.95 temperature 10 1440 > th dose independent rect. 6 23
33 164.14 humidity 50 1440 < th dose independent rect. 16 1
34 164.14 humidity 50 1440 < th dose dependent rect. 16 1
36 165.24 temperature 25 720 > th dose dependent rect. 18 4
39 165.42 wind 1 90 < th dose dependent rect. 4 1
42 165.65 wind 1 90 < th dose independent rect. 4 1
43 165.68 humidity 50 1440 > th dose independent rect. 16 1
47 166.07 temperature 25 270 > th dose independent rect. 17 8
111 166.99 temperature 25 720 > th dose independent rect. 18 4
114 167.06 temperature 25 270 > th dose independent rect. 17 15
115 167.13 temperature 25 270 > th dose independent sin 14 NA
144 167.30 temperature 25 720 > th dose dependent sin 13 NA
157 167.40 temperature 25 270 > th dose independent rect. 19 1
185 167.69 wind 1 90 < th dose independent rect. 1 4
189 167.70 temperature 25 30 > th dose dependent rect. 19 9
197 167.74 temperature 25 270 < th dose independent rect. 18 8
209 167.81 temperature 25 30 > th dose dependent rect. 19 7
222 167.91 humidity 60 10 < th dose independent rect. 16 1
227 167.95 humidity 60 10 < th dose dependent rect. 16 1
237 168.02 atmosphere 1005 10 > th dose independent rect. 5 1
247 168.13 temperature 30 10 > th dose dependent rect. 16 1
251 168.18 temperature 30 10 > th dose independent rect. 16 1
256 168.20 radiation 10 10 > th dose independent rect. 16 1
267 168.24 atmosphere 1005 10 < th dose independent rect. 16 1
271 168.26 temperature 20 10 > th dose dependent rect. 5 1
280 168.30 humidity 70 720 < th dose dependent rect. 18 13
281 168.31 humidity 70 720 < th dose dependent rect. 18 2
296 168.33 wind 3 10 < th dose dependent rect. 5 1
303 168.36 humidity 90 90 > th dose dependent rect. 4 1
306 168.38 wind 1 90 < th dose dependent rect. 1 4
312 168.43 wind 5 10 < th dose independent rect. 16 1
322 168.47 radiation 1 720 > th dose dependent rect. 18 1
341 168.51 humidity 60 4320 < th dose dependent rect. 16 4
363 168.55 humidity 60 720 < th dose independent rect. 18 1
390 168.63 temperature 25 720 < th dose independent rect. 19 1
394 168.64 wind 9 43200 > th dose independent rect. 9 11
432 168.68 humidity 50 1440 > th dose independent rect. 16 10
436 168.69 humidity 50 1440 > th dose independent rect. 16 8
437 168.69 humidity 50 1440 > th dose independent rect. 16 13
451 168.73 humidity 50 1440 > th dose independent rect. 16 17
495 168.76 temperature 30 43200 > th dose dependent rect. 18 1
516 168.77 wind 9 43200 > th dose independent rect. 9 8
532 168.78 temperature 30 43200 > th dose independent rect. 18 1
539 168.78 wind 1 90 < th dose independent rect. 4 6
570 168.80 temperature 30 43200 < th dose independent rect. 18 2
571 168.80 wind 9 43200 < th dose independent rect. 9 11
573 168.81 temperature 20 10 > th dose independent rect. 5 1
585 168.83 temperature 30 43200 < th dose independent rect. 18 9
592 168.84 temperature 30 43200 < th dose independent rect. 18 11
593 168.84 temperature 30 43200 < th dose independent rect. 18 14
599 168.86 temperature 30 43200 < th dose independent rect. 18 7
617 168.87 wind 7 43200 > th dose dependent rect. 10 7
622 168.88 temperature 30 1440 < th dose independent rect. 10 3
623 168.88 wind 9 43200 < th dose independent rect. 9 8
670 168.92 wind 9 43200 > th dose independent rect. 10 15
682 168.94 wind 9 43200 > th dose independent sin 20 NA
683 168.94 temperature 25 270 < th dose independent rect. 23 1
686 168.94 wind 9 43200 > th dose independent rect. 11 20
706 168.97 humidity 90 10 > th dose independent rect. 5 1
748 169.01 humidity 50 1440 > th dose independent sin 12 NA
749 169.01 humidity 50 1440 < th dose independent sin 11 NA
829 169.06 temperature 30 1440 < th dose independent rect. 18 19
834 169.07 wind 9 43200 < th dose independent sin 21 NA
888 169.10 wind 9 43200 < th dose independent rect. 10 14
903 169.12 temperature 25 270 < th dose independent sin 12 NA
927 169.13 wind 9 43200 > th dose independent rect. 13 17
930 169.13 wind 9 43200 < th dose independent rect. 10 20
950 169.14 wind 9 43200 > th dose independent rect. 13 14
955 169.14 temperature 20 90 > th dose dependent rect. 4 1
956 169.14 temperature 30 14400 > th dose dependent rect. 16 1
965 169.15 wind 9 43200 > th dose independent rect. 13 11
970 169.15 wind 9 43200 < th dose independent rect. 3 17
972 169.15 temperature 25 14400 > th dose dependent rect. 22 1
987 169.16 wind 9 43200 < th dose independent rect. 3 14
990 169.16 wind 9 43200 > th dose independent rect. 22 17