Os03g0563400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, BED-type predicted domain containing protein.
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Os03g0563400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, BED-type predicted domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.57 | 0.356 | 3.05 | 0.0596 | 0.0806 | 0.686 | 0.288 | -2.48 | -0.0343 | 11 | 50 | 20 | -- | -- |
| 60.52 | 0.362 | 3.05 | 0.0774 | 0.0216 | 1.29 | 0.0792 | -- | -0.0687 | 11.2 | 53.66 | 103 | -- | -- |
| 57.85 | 0.354 | 3.05 | 0.0659 | 0.0857 | 0.697 | -- | -2.3 | -0.032 | 10.1 | 50 | 19 | -- | -- |
| 59.85 | 0.36 | 3.06 | 0.0863 | 0.0714 | 1.35 | -- | -- | -0.0414 | 8.7 | 55.82 | 121 | -- | -- |
| 58.25 | 0.355 | 3.05 | 0.0659 | -- | 0.744 | -- | -2.29 | -0.0318 | -- | 50 | 19 | -- | -- |
| 69.66 | 0.391 | 3.07 | -0.023 | 0.169 | -- | -0.179 | -- | -0.0786 | 11 | -- | -- | -- | -- |
| 69.8 | 0.391 | 3.07 | -0.0303 | 0.169 | -- | -- | -- | -0.0792 | 11 | -- | -- | -- | -- |
| 60.11 | 0.361 | 3.06 | 0.0878 | -- | 1.37 | -- | -- | -0.0394 | -- | 55.51 | 121 | -- | -- |
| 60.03 | 0.361 | 3.06 | -- | 0.071 | 1.3 | -- | -- | -0.0509 | 8.56 | 55.53 | 121 | -- | -- |
| 71.59 | 0.395 | 3.07 | -0.0342 | -- | -- | -- | -- | -0.0805 | -- | -- | -- | -- | -- |
| 69.82 | 0.391 | 3.07 | -- | 0.17 | -- | -- | -- | -0.0758 | 11.1 | -- | -- | -- | -- |
| 60.3 | 0.362 | 3.06 | -- | -- | 1.33 | -- | -- | -0.0498 | -- | 55.42 | 121 | -- | -- |
| 71.62 | 0.395 | 3.07 | -- | -- | -- | -- | -- | -0.0767 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.08 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 2 | 58.08 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 3 | 59.62 | radiation | 40 | 90 | > th | dose dependent | rect. | 11 | 1 |
| 6 | 59.98 | radiation | 40 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 11 | 60.23 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 59 | 60.48 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 62 | 60.53 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 74 | 60.73 | radiation | 40 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 75 | 60.75 | radiation | 40 | 10 | > th | dose dependent | sin | 20 | NA |
| 127 | 60.93 | radiation | 40 | 10 | > th | dose dependent | no | NA | NA |
| 361 | 61.03 | radiation | 40 | 90 | > th | dose independent | rect. | 11 | 1 |
| 363 | 61.08 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 21 |
| 410 | 61.37 | radiation | 40 | 90 | > th | dose dependent | sin | 1 | NA |
| 455 | 61.48 | radiation | 40 | 90 | > th | dose dependent | no | NA | NA |
| 620 | 61.68 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 630 | 61.68 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 642 | 61.71 | radiation | 40 | 10 | > th | dose independent | rect. | 11 | 1 |
| 696 | 62.08 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |