Os03g0563300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mg-chelatase subunit (Fragment).
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Os03g0563300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mg-chelatase subunit (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.19 | 0.421 | 13.5 | -0.318 | 0.672 | 0.266 | 0.21 | -2.13 | -0.633 | 18.4 | 20.74 | 757 | -- | -- |
| 88.39 | 0.438 | 13.6 | -0.485 | 0.669 | 0.708 | 0.322 | -- | -0.735 | 18.3 | 18.49 | 2299 | -- | -- |
| 80.25 | 0.417 | 13.5 | -0.315 | 0.673 | 0.264 | -- | -2.16 | -0.631 | 18.3 | 20.76 | 735 | -- | -- |
| 86.64 | 0.434 | 13.5 | -0.42 | 0.644 | 1.22 | -- | -- | -0.703 | 18.1 | 16.7 | 6559 | -- | -- |
| 103.17 | 0.473 | 13.5 | -0.332 | -- | 0.142 | -- | -2.33 | -0.666 | -- | 20.71 | 795 | -- | -- |
| 99.2 | 0.467 | 13.6 | -0.928 | 0.642 | -- | 0.889 | -- | -0.841 | 18.7 | -- | -- | -- | -- |
| 100.32 | 0.469 | 13.6 | -0.937 | 0.661 | -- | -- | -- | -0.836 | 18 | -- | -- | -- | -- |
| 109.03 | 0.486 | 13.5 | -0.43 | -- | 1.25 | -- | -- | -0.704 | -- | 16.5 | 6660 | -- | -- |
| 89.81 | 0.441 | 13.5 | -- | 0.654 | 1.52 | -- | -- | -0.614 | 18.1 | 16.6 | 8053 | -- | -- |
| 122.97 | 0.518 | 13.6 | -0.957 | -- | -- | -- | -- | -0.851 | -- | -- | -- | -- | -- |
| 123.49 | 0.52 | 13.6 | -- | 0.675 | -- | -- | -- | -0.732 | 18 | -- | -- | -- | -- |
| 112.16 | 0.493 | 13.5 | -- | -- | 1.54 | -- | -- | -0.622 | -- | 16.63 | 8301 | -- | -- |
| 147.11 | 0.566 | 13.5 | -- | -- | -- | -- | -- | -0.745 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.19 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 8 |
| 4 | 76.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 5 | 76.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 7 | 76.19 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 20 | 76.97 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 20 |
| 25 | 77.03 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 12 |
| 28 | 77.10 | temperature | 15 | 720 | > th | dose dependent | sin | 12 | NA |
| 31 | 77.14 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 16 |
| 39 | 77.27 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 48 | 77.37 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 55 | 77.44 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 84 | 77.99 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 88 | 78.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 7 |
| 90 | 78.05 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 8 |
| 96 | 78.19 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 100 | 78.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 103 | 78.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 115 | 78.40 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 116 | 78.40 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 117 | 78.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 131 | 78.49 | radiation | 1 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 134 | 78.52 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 137 | 78.53 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 149 | 78.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 216 | 79.12 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 2 |
| 251 | 79.30 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 342 | 79.68 | radiation | 40 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 350 | 79.70 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 391 | 79.88 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 16 |
| 403 | 79.91 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 417 | 79.96 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 19 |
| 430 | 80.00 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 436 | 80.03 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 438 | 80.04 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 17 |
| 441 | 80.05 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 14 |
| 512 | 80.23 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 515 | 80.24 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 545 | 80.34 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 16 |
| 572 | 80.40 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 596 | 80.47 | radiation | 20 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 619 | 80.52 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 627 | 80.55 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 13 |
| 728 | 80.78 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 779 | 80.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 784 | 80.89 | wind | 1 | 43200 | < th | dose dependent | sin | 19 | NA |
| 788 | 80.90 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 22 |
| 809 | 80.95 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 812 | 80.95 | temperature | 15 | 30 | > th | dose dependent | rect. | 17 | 14 |
| 818 | 80.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 13 |
| 826 | 80.98 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 22 |
| 892 | 81.12 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 13 |
| 909 | 81.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 978 | 81.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 999 | 81.32 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |