Os03g0563200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0563200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 267.49 | 0.768 | 3.04 | 0.432 | 0.309 | 0.754 | 0.501 | 2.15 | 0.0544 | 20.5 | 6.33 | 1433 | -- | -- |
| 274.31 | 0.771 | 3.01 | 0.708 | 0.278 | 0.788 | 0.559 | -- | 0.13 | 20 | 6.416 | 1440 | -- | -- |
| 268.24 | 0.763 | 3.04 | 0.398 | 0.293 | 0.751 | -- | 2.22 | 0.0475 | 20.6 | 6.33 | 1439 | -- | -- |
| 275.17 | 0.773 | 3.01 | 0.697 | 0.297 | 0.792 | -- | -- | 0.132 | 20.7 | 6.47 | 1429 | -- | -- |
| 271.54 | 0.767 | 3.02 | 0.428 | -- | 0.807 | -- | 2.15 | 0.0724 | -- | 7.67 | 1495 | -- | -- |
| 288.37 | 0.796 | 3.05 | 0.636 | 0.293 | -- | 0.562 | -- | -0.0142 | 19.6 | -- | -- | -- | -- |
| 289.1 | 0.796 | 3.05 | 0.62 | 0.293 | -- | -- | -- | -0.0145 | 20.3 | -- | -- | -- | -- |
| 278.11 | 0.777 | 3 | 0.689 | -- | 0.908 | -- | -- | 0.136 | -- | 6.401 | 1497 | -- | -- |
| 286.48 | 0.788 | 3.03 | -- | 0.255 | 0.7 | -- | -- | 0.0452 | 20.4 | 9.864 | 1464 | -- | -- |
| 293.86 | 0.801 | 3.04 | 0.618 | -- | -- | -- | -- | -0.0177 | -- | -- | -- | -- | -- |
| 299.22 | 0.809 | 3.06 | -- | 0.29 | -- | -- | -- | -0.0835 | 20.4 | -- | -- | -- | -- |
| 289.09 | 0.792 | 3.02 | -- | -- | 0.8 | -- | -- | 0.0552 | -- | 9.525 | 1506 | -- | -- |
| 303.93 | 0.814 | 3.05 | -- | -- | -- | -- | -- | -0.0863 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 258.14 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 2 | 258.15 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 20 | 260.46 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 14 | 6 |
| 26 | 260.94 | wind | 3.0 | 720 | < th | dose independent | rect. | 2 | 1 |
| 29 | 261.17 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 30 | 261.18 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 31 | 261.18 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 11 |
| 34 | 261.19 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 42 | 261.34 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 44 | 261.39 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 46 | 261.42 | wind | 5.0 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 64 | 261.66 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 14 | 2 |
| 72 | 261.81 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 83 | 262.14 | wind | 5.0 | 720 | > th | dose independent | rect. | 1 | 5 |
| 102 | 262.30 | wind | 5.0 | 720 | > th | dose independent | rect. | 24 | 8 |
| 109 | 262.51 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 166 | 263.20 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 183 | 263.33 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 195 | 263.54 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 216 | 263.71 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 218 | 263.76 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 219 | 263.76 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 227 | 263.79 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 239 | 263.99 | wind | 5.0 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 256 | 264.14 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 262 | 264.19 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 21 | 11 |
| 269 | 264.28 | wind | 5.0 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 281 | 264.37 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 307 | 264.55 | humidity | 90.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 333 | 264.76 | wind | 3.0 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 341 | 264.83 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 348 | 264.88 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 13 | 7 |
| 360 | 264.96 | wind | 3.0 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 405 | 265.10 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 441 | 265.25 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 445 | 265.27 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 551 | 265.83 | radiation | 10.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 570 | 265.98 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 571 | 265.98 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 582 | 266.03 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 19 | 5 |
| 584 | 266.03 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 604 | 266.13 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 664 | 266.32 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 706 | 266.44 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 799 | 266.67 | wind | 7.0 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 835 | 266.76 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 843 | 266.77 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 19 | 6 |
| 865 | 266.82 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 870 | 266.82 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 953 | 267.04 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 957 | 267.04 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 1 |