Os03g0562400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Di-copper centre-containing domain containing protein.
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Os03g0562400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Di-copper centre-containing domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.43 | 0.61 | 3.02 | -0.266 | 0.112 | 2.03 | 0.137 | -5.22 | 0.00654 | 10.1 | 0.09747 | 6 | -- | -- |
| 177.95 | 0.621 | 3 | -0.245 | 0.132 | 1.03 | 0.396 | -- | -0.00585 | 9.59 | 0.09016 | 5 | -- | -- |
| 168.5 | 0.605 | 3.02 | -0.262 | 0.114 | 2.02 | -- | -5.24 | 0.0106 | 10.2 | 0.09999 | 5 | -- | -- |
| 178.52 | 0.622 | 3 | -0.228 | 0.129 | 1.01 | -- | -- | -0.00472 | 10 | 0.09999 | 5 | -- | -- |
| 169.23 | 0.606 | 3.02 | -0.261 | -- | 2.02 | -- | -5.35 | 0.00635 | -- | 0.09855 | 5 | -- | -- |
| 184.89 | 0.637 | 3.01 | -0.186 | 0.13 | -- | 0.416 | -- | -0.0279 | 7.51 | -- | -- | -- | -- |
| 185.36 | 0.638 | 3.01 | -0.176 | 0.13 | -- | -- | -- | -0.0283 | 7.86 | -- | -- | -- | -- |
| 179.52 | 0.624 | 3.01 | -0.229 | -- | 0.986 | -- | -- | -0.00535 | -- | 0.07822 | 5 | -- | -- |
| 179.89 | 0.625 | 3 | -- | 0.13 | 0.959 | -- | -- | 0.0174 | 10.1 | 2.855e-05 | 5 | -- | -- |
| 186.28 | 0.638 | 3.01 | -0.174 | -- | -- | -- | -- | -0.0265 | -- | -- | -- | -- | -- |
| 186.17 | 0.638 | 3 | -- | 0.129 | -- | -- | -- | -0.00872 | 7.95 | -- | -- | -- | -- |
| 180.88 | 0.626 | 3 | -- | -- | 0.939 | -- | -- | 0.0187 | -- | 0.09425 | 5 | -- | -- |
| 187.08 | 0.638 | 3.01 | -- | -- | -- | -- | -- | -0.00718 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.77 | wind | 7.0 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 2 | 156.77 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 11 | 157.71 | wind | 1.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 38 | 161.06 | wind | 1.0 | 10 | < th | dose dependent | rect. | 11 | 15 |
| 47 | 161.42 | wind | 1.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 63 | 163.79 | wind | 1.0 | 10 | < th | dose independent | rect. | 17 | 9 |
| 72 | 165.19 | wind | 1.0 | 10 | < th | dose independent | rect. | 11 | 15 |
| 95 | 167.16 | wind | 1.0 | 10 | < th | dose dependent | sin | 16 | NA |
| 108 | 169.08 | humidity | 80.0 | 90 | > th | dose independent | rect. | 10 | 6 |
| 110 | 169.30 | humidity | 80.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 112 | 170.07 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 113 | 170.42 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 10 | 7 |
| 117 | 170.54 | humidity | 90.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 121 | 170.64 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 195 | 172.29 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 20 |
| 217 | 172.58 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 223 | 172.71 | temperature | 20.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 321 | 173.94 | wind | 1.0 | 10 | < th | dose dependent | rect. | 1 | 8 |
| 327 | 174.02 | wind | 1.0 | 10 | < th | dose independent | sin | 16 | NA |
| 358 | 174.24 | wind | 1.0 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 372 | 174.33 | wind | 1.0 | 10 | < th | dose independent | rect. | 4 | 22 |
| 373 | 174.34 | wind | 1.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 387 | 174.47 | wind | 1.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 399 | 174.55 | humidity | 70.0 | 10 | > th | dose independent | rect. | 11 | 5 |
| 408 | 174.62 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 2 |
| 409 | 174.62 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 453 | 174.86 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 455 | 174.89 | humidity | 90.0 | 720 | < th | dose independent | rect. | 7 | 7 |
| 463 | 174.94 | wind | 1.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 499 | 175.06 | wind | 1.0 | 270 | < th | dose independent | rect. | 22 | 1 |
| 566 | 175.32 | wind | 1.0 | 10 | < th | dose dependent | rect. | 1 | 21 |
| 602 | 175.45 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 10 | 9 |
| 605 | 175.46 | humidity | 80.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 634 | 175.56 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 15 | 4 |
| 652 | 175.67 | temperature | 20.0 | 270 | < th | dose independent | rect. | 5 | 13 |
| 660 | 175.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 10 | 7 |
| 674 | 175.75 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 24 | 12 |
| 685 | 175.81 | wind | 1.0 | 30 | > th | dose independent | sin | 14 | NA |
| 716 | 175.97 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 719 | 175.99 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 796 | 176.16 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 818 | 176.19 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 4 |
| 819 | 176.19 | wind | 1.0 | 10 | < th | dose dependent | no | NA | NA |
| 854 | 176.22 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 8 |
| 859 | 176.24 | humidity | 70.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 905 | 176.35 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 906 | 176.36 | humidity | 80.0 | 270 | > th | dose independent | rect. | 7 | 22 |
| 929 | 176.43 | temperature | 20.0 | 270 | < th | dose independent | rect. | 8 | 10 |
| 942 | 176.46 | humidity | 80.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 944 | 176.46 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 4 | 8 |
| 946 | 176.46 | wind | 1.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 949 | 176.47 | humidity | 90.0 | 90 | > th | dose independent | rect. | 16 | 3 |
| 951 | 176.47 | humidity | 80.0 | 90 | > th | dose independent | rect. | 10 | 19 |
| 959 | 176.49 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 10 | 19 |
| 977 | 176.55 | temperature | 20.0 | 270 | > th | dose independent | sin | 0 | NA |
| 988 | 176.58 | temperature | 20.0 | 270 | < th | dose independent | sin | 0 | NA |
| 996 | 176.60 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 6 | 6 |
| 997 | 176.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 7 |
| 1000 | 176.61 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 21 | 15 |