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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0560200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0497) R2 : 0.00393
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.14 (0.105) R2dN8 : 0.00508 R2N8 : 0.00393
σ : 0.936
deviance : 402.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
382.86 0.911 3.17 0.172 0.492 -0.278 0.221 0.417 -0.0121 7.18 1005 10 -- --
383.83 0.919 3.18 0.158 0.493 -0.267 0.224 -- -0.0282 7.16 1005 10 -- --
382.95 0.918 3.18 0.174 0.489 -0.276 -- 0.421 -0.0146 7.18 1005 10 -- --
383.96 0.919 3.18 0.163 0.493 -0.265 -- -- -0.0294 7.17 1005 10 -- --
395.47 0.931 3.19 0.185 -- -0.244 -- 0.468 -0.017 -- 1005 10 -- --
389.67 0.925 3.2 0.166 0.464 -- 0.15 -- -0.128 7.44 -- -- -- --
389.73 0.924 3.2 0.17 0.464 -- -- -- -0.128 7.45 -- -- -- --
396.73 0.932 3.19 0.173 -- -0.231 -- -- -0.0335 -- 1005 10 -- --
384.66 0.918 3.18 -- 0.495 -0.266 -- -- -0.047 7.15 1005 10 -- --
401.21 0.936 3.21 0.177 -- -- -- -- -0.121 -- -- -- -- --
390.49 0.924 3.2 -- 0.465 -- -- -- -0.147 7.42 -- -- -- --
397.52 0.932 3.19 -- -- -0.232 -- -- -0.0523 -- 1005 10 -- --
402.03 0.936 3.21 -- -- -- -- -- -0.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 371.75 wind 7.0 90 > th dose dependent rect. 8 1
2 371.96 wind 7.0 90 > th dose dependent rect. 4 5
6 372.14 wind 7.0 90 > th dose independent rect. 8 1
7 373.27 wind 7.0 90 > th dose independent rect. 4 5
8 373.42 wind 5.0 10 > th dose independent rect. 10 1
12 373.42 wind 5.0 10 > th dose dependent rect. 10 1
19 373.53 humidity 90.0 90 > th dose independent rect. 8 2
21 374.07 humidity 90.0 90 > th dose dependent rect. 8 2
23 374.31 wind 1.0 10 < th dose independent rect. 22 1
25 374.31 wind 1.0 10 < th dose dependent rect. 22 1
27 374.84 wind 3.0 90 < th dose independent rect. 19 3
34 375.63 wind 9.0 90 > th dose dependent rect. 20 14
62 376.27 wind 7.0 1440 < th dose independent rect. 3 1
64 376.44 wind 9.0 1440 < th dose independent rect. 23 4
77 376.76 wind 3.0 90 < th dose dependent rect. 20 1
78 376.93 wind 5.0 1440 > th dose independent rect. 2 2
79 376.93 wind 5.0 1440 > th dose dependent rect. 2 2
86 377.31 atmosphere 1005.0 720 < th dose independent rect. 11 1
87 377.33 wind 3.0 90 < th dose dependent rect. 19 3
90 377.35 atmosphere 1005.0 30 < th dose independent rect. 5 18
93 377.43 wind 7.0 1440 < th dose independent rect. 24 1
108 377.76 wind 7.0 1440 > th dose dependent rect. 4 1
111 377.77 wind 7.0 1440 > th dose independent rect. 4 1
116 377.82 atmosphere 1005.0 720 < th dose independent rect. 9 3
136 378.21 precipitation 0.1 270 > th dose independent rect. 2 1
137 378.21 precipitation 0.1 270 > th dose dependent rect. 2 1
138 378.23 atmosphere 1005.0 30 < th dose independent rect. 9 14
161 378.48 wind 7.0 1440 < th dose independent rect. 23 7
180 378.67 wind 7.0 1440 > th dose independent rect. 22 7
186 378.72 wind 5.0 1440 > th dose dependent rect. 22 8
226 378.89 wind 9.0 1440 > th dose independent rect. 22 1
231 378.89 wind 9.0 1440 > th dose dependent rect. 22 1
248 378.95 atmosphere 1005.0 30 > th dose independent rect. 5 21
264 379.02 wind 1.0 10 > th dose independent rect. 22 23
300 379.13 atmosphere 1005.0 10 < th dose independent rect. 17 6
328 379.26 atmosphere 1005.0 30 > th dose independent rect. 9 17
351 379.29 wind 1.0 30 < th dose independent rect. 2 1
361 379.32 radiation 20.0 30 < th dose independent rect. 22 15
369 379.37 wind 3.0 30 < th dose dependent rect. 2 1
415 379.56 humidity 80.0 30 > th dose independent rect. 21 1
421 379.58 humidity 80.0 10 > th dose dependent rect. 21 1
422 379.59 wind 7.0 720 < th dose independent rect. 3 7
427 379.61 temperature 25.0 10 < th dose independent rect. 9 17
445 379.67 atmosphere 1005.0 30 > th dose dependent rect. 2 1
464 379.78 temperature 20.0 30 > th dose dependent rect. 2 1
494 379.89 atmosphere 1005.0 30 > th dose independent rect. 2 1
516 380.02 temperature 25.0 90 < th dose independent rect. 22 22
519 380.02 atmosphere 1015.0 90 < th dose dependent rect. 10 12
536 380.07 atmosphere 1015.0 30 < th dose dependent rect. 2 20
540 380.08 atmosphere 1005.0 30 > th dose independent rect. 22 23
542 380.09 humidity 80.0 30 > th dose independent rect. 2 1
544 380.10 atmosphere 995.0 4320 > th dose independent rect. 3 1
560 380.15 humidity 80.0 30 > th dose dependent rect. 2 1
564 380.17 temperature 10.0 30 > th dose independent rect. 2 1
566 380.17 temperature 30.0 30 < th dose independent rect. 2 1
567 380.17 humidity 50.0 30 > th dose independent rect. 2 1
570 380.17 atmosphere 995.0 30 > th dose independent rect. 2 1
571 380.17 atmosphere 1010.0 30 < th dose independent rect. 2 1
573 380.17 radiation 1.0 30 < th dose independent rect. 2 1
578 380.17 precipitation 0.1 30 < th dose independent rect. 2 1
580 380.17 temperature 10.0 30 > th dose independent rect. 3 23
581 380.17 humidity 50.0 30 > th dose dependent rect. 2 1
584 380.17 radiation 1.0 30 < th dose dependent rect. 2 1
589 380.17 precipitation 0.1 30 < th dose dependent rect. 2 1
613 380.24 temperature 20.0 90 < th dose dependent rect. 21 1
622 380.26 temperature 20.0 90 < th dose independent rect. 20 1
677 380.40 atmosphere 1005.0 30 > th dose independent rect. 9 15
688 380.45 wind 9.0 4320 < th dose dependent rect. 21 2
692 380.46 wind 1.0 4320 > th dose dependent rect. 21 2
703 380.51 atmosphere 1015.0 30 < th dose dependent rect. 2 1
718 380.61 humidity 80.0 270 > th dose independent rect. 18 1
720 380.62 atmosphere 1005.0 30 < th dose independent sin 21 NA
726 380.63 atmosphere 995.0 30 > th dose dependent rect. 22 23
735 380.68 humidity 60.0 10 > th dose independent rect. 2 11
746 380.71 atmosphere 1005.0 270 < th dose dependent rect. 1 19
752 380.75 wind 5.0 90 < th dose independent rect. 22 12
758 380.77 temperature 30.0 30 < th dose dependent rect. 2 1
759 380.77 wind 9.0 4320 < th dose dependent rect. 21 4
761 380.78 wind 9.0 90 > th dose independent rect. 15 1
763 380.78 temperature 25.0 90 < th dose independent rect. 22 18
764 380.78 wind 9.0 90 > th dose dependent rect. 15 1
770 380.79 wind 1.0 4320 > th dose dependent rect. 21 4
775 380.80 radiation 1.0 4320 < th dose dependent rect. 3 1
777 380.81 wind 9.0 10 > th dose independent rect. 15 1
788 380.81 wind 9.0 10 > th dose dependent rect. 15 1
814 380.85 radiation 40.0 720 < th dose independent rect. 24 22
816 380.86 wind 7.0 90 > th dose independent rect. 24 10
820 380.88 atmosphere 1005.0 720 > th dose independent rect. 9 1
837 380.92 precipitation 0.1 1440 > th dose independent rect. 3 1
848 380.95 humidity 80.0 14400 < th dose independent rect. 3 6
851 380.96 radiation 1.0 43200 < th dose dependent rect. 3 1
852 380.96 precipitation 0.1 1440 > th dose dependent rect. 3 1
855 380.96 radiation 30.0 30 < th dose dependent rect. 22 15
889 381.02 temperature 10.0 1440 > th dose independent rect. 3 1
892 381.02 temperature 30.0 1440 < th dose independent rect. 3 1
896 381.02 humidity 50.0 1440 > th dose independent rect. 3 1
906 381.02 radiation 1.0 1440 < th dose independent rect. 3 1
926 381.02 precipitation 0.1 4320 > th dose independent rect. 23 1
927 381.02 temperature 10.0 1440 > th dose independent rect. 4 23
939 381.02 precipitation 0.1 4320 > th dose dependent rect. 23 1
946 381.03 wind 9.0 4320 < th dose dependent rect. 19 9
952 381.04 wind 1.0 4320 > th dose dependent rect. 19 9
981 381.11 atmosphere 1005.0 30 < th dose independent rect. 17 20