Os03g0560000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0560000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 247.68 | 0.739 | 3.69 | -0.658 | 0.352 | -0.485 | 0.85 | -1.14 | 0.2 | 6.26 | 1014 | 4463 | -- | -- |
| 251.64 | 0.739 | 3.68 | -0.483 | 0.365 | -0.708 | 0.897 | -- | 0.238 | 6.17 | 1014 | 3752 | -- | -- |
| 248.61 | 0.734 | 3.7 | -0.668 | 0.336 | -0.407 | -- | -1.25 | 0.192 | 6.19 | 1015 | 7932 | -- | -- |
| 253.04 | 0.741 | 3.68 | -0.438 | 0.363 | -0.757 | -- | -- | 0.24 | 6.42 | 1014 | 3746 | -- | -- |
| 254.51 | 0.743 | 3.74 | -0.732 | -- | -0.38 | -- | -1.37 | 0.161 | -- | 1015 | 7668 | -- | -- |
| 263.82 | 0.761 | 3.7 | -0.456 | 0.334 | -- | 0.768 | -- | 0.169 | 6.21 | -- | -- | -- | -- |
| 265.21 | 0.763 | 3.7 | -0.447 | 0.339 | -- | -- | -- | 0.167 | 6.57 | -- | -- | -- | -- |
| 259.8 | 0.751 | 3.69 | -0.429 | -- | -0.751 | -- | -- | 0.247 | -- | 1014 | 3625 | -- | -- |
| 257.25 | 0.747 | 3.67 | -- | 0.378 | -0.762 | -- | -- | 0.297 | 6.26 | 1014 | 3816 | -- | -- |
| 271.2 | 0.77 | 3.71 | -0.439 | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
| 270.47 | 0.769 | 3.69 | -- | 0.333 | -- | -- | -- | 0.217 | 6.65 | -- | -- | -- | -- |
| 263.97 | 0.757 | 3.68 | -- | -- | -0.765 | -- | -- | 0.304 | -- | 1014 | 3687 | -- | -- |
| 276.27 | 0.776 | 3.7 | -- | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 243.53 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 2 | 243.64 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 4 | 243.85 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 8 | 244.14 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 12 | 244.62 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 13 | 244.63 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 17 | 244.68 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 50 | 245.32 | wind | 7.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 60 | 245.39 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 83 | 245.57 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 90 | 245.71 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 91 | 245.72 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 93 | 245.73 | wind | 3.0 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 96 | 245.75 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 100 | 245.77 | wind | 5.0 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 103 | 245.80 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 105 | 245.80 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 108 | 245.83 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 116 | 245.91 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 118 | 245.91 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 125 | 245.94 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 128 | 245.96 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 3 |
| 132 | 246.00 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 3 |
| 144 | 246.08 | wind | 5.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 165 | 246.15 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 172 | 246.18 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 174 | 246.19 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 191 | 246.24 | wind | 3.0 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 199 | 246.29 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 209 | 246.34 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 233 | 246.43 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 240 | 246.45 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 248 | 246.48 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 3 |
| 282 | 246.60 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 287 | 246.62 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 297 | 246.65 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 6 |
| 307 | 246.67 | wind | 7.0 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 335 | 246.76 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 338 | 246.76 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 341 | 246.78 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 20 | 11 |
| 421 | 247.00 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 21 | NA |
| 424 | 247.01 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 21 | NA |
| 429 | 247.03 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 433 | 247.04 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 24 | 4 |
| 454 | 247.09 | wind | 5.0 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 476 | 247.13 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 21 | NA |
| 512 | 247.18 | wind | 7.0 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 523 | 247.19 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 540 | 247.22 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 571 | 247.26 | wind | 5.0 | 1440 | > th | dose independent | rect. | 23 | 9 |
| 606 | 247.32 | wind | 5.0 | 1440 | > th | dose independent | rect. | 23 | 11 |
| 611 | 247.33 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 746 | 247.56 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 807 | 247.65 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 4 |