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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0559900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.94 (0.0274) R2 : 0.438
β1 : -1.31 (0.101) R2dD : 0.216 R2D : 0.24
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.641 (0.0586) R2dN8 : 0.198 R2N8 : 0.222
σ : 0.515
deviance : 121.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.4 0.466 3.95 -1.44 0.339 0.578 -0.0945 -1.08 0.592 10.1 9.25 11 -- --
100.43 0.467 3.94 -1.39 0.331 0.574 1.06 -- 0.602 10.6 9.05 6 -- --
98.41 0.462 3.95 -1.43 0.338 0.577 -- -1.01 0.593 10.1 9.24 11 -- --
104.81 0.477 3.94 -1.36 0.311 0.56 -- -- 0.604 10.1 9.24 11 -- --
101.67 0.472 3.96 -1.42 -- 0.373 -- -0.954 0.59 -- 9.24 11 -- --
109.46 0.49 3.95 -1.36 0.355 -- -1.02 -- 0.628 1.26 -- -- -- --
113.57 0.499 3.94 -1.32 0.364 -- -- -- 0.633 1.85 -- -- -- --
107.25 0.482 3.95 -1.35 -- 0.374 -- -- 0.603 -- 9.38 9 -- --
148.9 0.568 3.9 -- 0.248 0.544 -- -- 0.792 10 13.69 15 -- --
121.58 0.515 3.94 -1.31 -- -- -- -- 0.641 -- -- -- -- --
159.54 0.591 3.91 -- 0.34 -- -- -- 0.78 1.74 -- -- -- --
150.53 0.571 3.9 -- -- 0.433 -- -- 0.807 -- 14.48 41 -- --
166.56 0.602 3.91 -- -- -- -- -- 0.786 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 96.90 radiation 10 10 < th dose independent rect. 21 23
2 96.91 radiation 20 30 < th dose dependent rect. 21 23
4 97.27 radiation 10 10 > th dose independent rect. 11 23
5 97.44 radiation 10 10 < th dose independent rect. 17 23
7 97.84 temperature 20 720 > th dose dependent rect. 19 12
10 97.91 temperature 20 720 > th dose dependent sin 11 NA
23 98.42 temperature 20 30 > th dose dependent rect. 1 6
27 98.50 radiation 10 30 > th dose independent rect. 7 11
48 98.64 temperature 25 720 < th dose dependent rect. 20 8
51 98.69 temperature 25 720 < th dose dependent rect. 19 10
70 98.84 radiation 10 10 < th dose independent sin 2 NA
124 99.16 radiation 10 10 < th dose independent rect. 1 15
140 99.22 radiation 20 10 < th dose dependent rect. 9 23
141 99.23 radiation 10 10 < th dose independent rect. 9 23
142 99.23 temperature 25 720 < th dose dependent sin 12 NA
153 99.26 radiation 10 10 < th dose independent rect. 13 23
158 99.27 radiation 20 10 < th dose dependent rect. 17 23
163 99.30 radiation 10 10 < th dose independent rect. 11 23
164 99.30 humidity 90 14400 > th dose dependent rect. 23 1
167 99.32 radiation 10 10 < th dose independent no NA NA
170 99.35 radiation 10 10 < th dose independent rect. 15 23
185 99.44 radiation 10 10 < th dose independent rect. 1 23
192 99.48 temperature 20 90 > th dose independent rect. 17 14
196 99.52 temperature 20 30 > th dose independent rect. 1 6
199 99.53 temperature 25 1440 < th dose independent rect. 20 1
226 99.60 temperature 20 1440 > th dose dependent rect. 20 1
233 99.62 radiation 20 90 < th dose independent rect. 12 19
265 99.75 temperature 25 1440 > th dose independent rect. 20 1
282 99.80 radiation 20 10 < th dose dependent rect. 12 22
290 99.84 radiation 20 10 < th dose dependent no NA NA
305 99.88 radiation 20 10 < th dose dependent rect. 15 23
311 99.90 radiation 10 10 < th dose independent rect. 1 19
314 99.91 radiation 20 10 < th dose dependent sin 1 NA
320 99.92 radiation 10 10 < th dose independent rect. 4 12
342 100.01 temperature 20 720 > th dose dependent rect. 1 3
348 100.03 radiation 40 90 < th dose dependent rect. 12 19
354 100.06 temperature 25 720 < th dose dependent rect. 23 2
400 100.17 radiation 20 10 < th dose dependent rect. 1 23
406 100.19 radiation 10 90 < th dose independent rect. 1 18
416 100.22 radiation 10 90 < th dose independent rect. 12 22
421 100.23 wind 3 1440 < th dose dependent rect. 11 1
428 100.26 atmosphere 995 43200 > th dose independent rect. 21 13
440 100.29 atmosphere 995 43200 < th dose independent rect. 21 13
445 100.29 temperature 15 30 > th dose dependent rect. 1 10
465 100.34 temperature 20 30 > th dose independent rect. 21 10
466 100.34 radiation 10 10 > th dose independent rect. 17 23
597 100.53 temperature 20 90 > th dose independent rect. 12 19
605 100.54 atmosphere 995 30 > th dose dependent rect. 11 14
615 100.57 radiation 10 10 > th dose independent sin 1 NA
633 100.60 temperature 20 10 > th dose independent rect. 1 10
651 100.63 atmosphere 995 43200 < th dose independent sin 9 NA
652 100.63 temperature 20 720 > th dose independent rect. 17 14
655 100.63 atmosphere 995 43200 < th dose dependent sin 11 NA
663 100.64 temperature 10 90 > th dose dependent rect. 17 14
667 100.65 temperature 20 270 > th dose independent rect. 23 8
686 100.67 radiation 10 10 > th dose independent rect. 15 23
696 100.68 temperature 25 4320 > th dose independent rect. 6 1
702 100.69 wind 3 30 < th dose independent rect. 1 10
728 100.70 temperature 15 30 > th dose dependent rect. 21 10
735 100.72 radiation 10 10 < th dose independent rect. 4 16
749 100.74 atmosphere 995 43200 > th dose independent sin 8 NA
750 100.74 radiation 10 10 > th dose independent no NA NA
831 100.74 temperature 20 1440 > th dose dependent rect. 5 2
860 100.78 wind 3 30 < th dose dependent sin 4 NA
880 100.81 temperature 25 1440 < th dose independent rect. 18 13
881 100.81 temperature 20 270 > th dose independent rect. 14 17
892 100.82 atmosphere 1005 10 > th dose dependent sin 17 NA
894 100.82 atmosphere 1005 30 > th dose dependent rect. 11 14
898 100.83 atmosphere 995 43200 > th dose independent rect. 20 2
901 100.83 wind 5 30 < th dose dependent rect. 1 10
902 100.84 temperature 25 4320 < th dose independent rect. 6 1
929 100.85 humidity 80 10 > th dose independent rect. 1 19
966 100.88 temperature 25 1440 < th dose dependent rect. 4 1
975 100.89 atmosphere 995 43200 < th dose independent rect. 3 5
989 100.90 atmosphere 995 43200 < th dose dependent rect. 21 12
998 100.91 temperature 20 720 > th dose independent rect. 19 10