Os03g0559700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0559700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.1 | 0.431 | 12.8 | 0.253 | 1.01 | -0.934 | -0.233 | 0.00251 | 0.505 | 17.1 | 11.25 | 274 | -- | -- |
| 84.06 | 0.427 | 12.8 | 0.256 | 1.02 | -0.939 | -0.243 | -- | 0.505 | 17.1 | 11.26 | 278 | -- | -- |
| 84.14 | 0.427 | 12.8 | 0.257 | 1.02 | -0.937 | -- | -0.0948 | 0.504 | 17.1 | 11.27 | 283 | -- | -- |
| 84.18 | 0.427 | 12.8 | 0.254 | 1.03 | -0.952 | -- | -- | 0.506 | 17.1 | 11.26 | 282 | -- | -- |
| 108.29 | 0.485 | 12.8 | 0.337 | -- | -0.496 | -- | -0.135 | 0.47 | -- | 20 | 60 | -- | -- |
| 100.43 | 0.47 | 12.8 | 0.104 | 0.637 | -- | -0.0831 | -- | 0.405 | 20.7 | -- | -- | -- | -- |
| 100.46 | 0.469 | 12.8 | 0.107 | 0.637 | -- | -- | -- | 0.405 | 20.7 | -- | -- | -- | -- |
| 107.24 | 0.482 | 12.8 | 0.159 | -- | -0.519 | -- | -- | 0.432 | -- | 20.16 | 54 | -- | -- |
| 85.88 | 0.432 | 12.8 | -- | 0.966 | -0.91 | -- | -- | 0.485 | 17.1 | 11.95 | 278 | -- | -- |
| 123.44 | 0.519 | 12.8 | 0.106 | -- | -- | -- | -- | 0.4 | -- | -- | -- | -- | -- |
| 100.76 | 0.47 | 12.8 | -- | 0.637 | -- | -- | -- | 0.393 | 20.8 | -- | -- | -- | -- |
| 107.65 | 0.483 | 12.8 | -- | -- | -0.46 | -- | -- | 0.402 | -- | 17.18 | 53 | -- | -- |
| 123.73 | 0.519 | 12.8 | -- | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.29 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 2 | 82.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 3 | 82.60 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 4 | 82.66 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 6 | 82.81 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 7 | 82.82 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 19 |
| 10 | 82.97 | atmosphere | 1010 | 30 | < th | dose dependent | sin | 10 | NA |
| 13 | 83.05 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 23 | 83.25 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 27 | 83.34 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 23 |
| 33 | 83.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 34 | 83.53 | radiation | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 40 | 83.65 | radiation | 10 | 270 | > th | dose independent | sin | 23 | NA |
| 41 | 83.67 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 55 | 83.96 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 17 |
| 58 | 83.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 79 | 84.17 | radiation | 20 | 270 | < th | dose dependent | sin | 23 | NA |
| 86 | 84.23 | radiation | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 87 | 84.24 | radiation | 10 | 270 | > th | dose independent | rect. | 7 | 11 |
| 109 | 84.28 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 2 | 23 |
| 113 | 84.30 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 118 | 84.39 | humidity | 70 | 10 | > th | dose independent | rect. | 6 | 19 |
| 130 | 84.43 | radiation | 10 | 270 | > th | dose independent | no | NA | NA |
| 215 | 84.51 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 16 | 9 |
| 217 | 84.54 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 15 | 10 |
| 224 | 84.57 | humidity | 70 | 270 | > th | dose independent | rect. | 4 | 15 |
| 247 | 84.70 | radiation | 20 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 293 | 84.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 310 | 84.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 316 | 84.90 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 330 | 84.97 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 23 |
| 345 | 85.05 | radiation | 30 | 270 | < th | dose dependent | no | NA | NA |
| 366 | 85.13 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 15 |
| 368 | 85.14 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 23 |
| 382 | 85.20 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 19 |
| 384 | 85.20 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 391 | 85.23 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 19 |
| 400 | 85.28 | temperature | 25 | 10 | > th | dose dependent | sin | 20 | NA |
| 406 | 85.29 | radiation | 1 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 416 | 85.31 | humidity | 70 | 270 | > th | dose independent | rect. | 2 | 21 |
| 422 | 85.32 | radiation | 20 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 435 | 85.35 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 442 | 85.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 487 | 85.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 508 | 85.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 520 | 85.52 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 522 | 85.53 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 523 | 85.53 | radiation | 1 | 270 | > th | dose dependent | sin | 22 | NA |
| 527 | 85.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 14 |
| 540 | 85.56 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 655 | 85.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 675 | 85.62 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 22 |
| 684 | 85.63 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 688 | 85.64 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 19 | 2 |
| 696 | 85.65 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 724 | 85.70 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 725 | 85.70 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 800 | 85.72 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 894 | 85.82 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 895 | 85.82 | temperature | 10 | 10 | > th | dose dependent | sin | 19 | NA |
| 919 | 85.85 | radiation | 20 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 938 | 85.89 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 964 | 85.91 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 993 | 85.94 | humidity | 60 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 995 | 85.94 | humidity | 60 | 270 | > th | dose dependent | rect. | 4 | 17 |