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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0558400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0394) R2 : 0.00416
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.114 (0.0829) R2dN8 : 0.00537 R2N8 : 0.00416
σ : 0.742
deviance : 252.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
243.31 0.733 2.87 -0.16 0.134 0.613 -0.579 -1.74 0.0267 16.2 1009 2691 -- --
246.27 0.731 2.85 -0.112 0.13 0.514 -0.472 -- -0.00388 15.9 1010 3169 -- --
244.19 0.728 2.87 -0.16 0.135 0.613 -- -1.68 0.0256 15.8 1009 2700 -- --
246.87 0.732 2.85 -0.116 0.131 0.511 -- -- -0.0071 15 1010 3169 -- --
245.1 0.729 2.87 -0.156 -- 0.594 -- -1.69 0.0105 -- 1008 2708 -- --
251.12 0.743 2.88 -0.035 0.117 -- -0.456 -- -0.114 15.8 -- -- -- --
251.69 0.743 2.88 -0.0413 0.115 -- -- -- -0.117 14.9 -- -- -- --
247.8 0.733 2.85 -0.121 -- 0.502 -- -- -0.0118 -- 1010 3171 -- --
247.21 0.732 2.85 -- 0.127 0.486 -- -- 8.55e-05 15 1010 3169 -- --
252.46 0.742 2.88 -0.0462 -- -- -- -- -0.12 -- -- -- -- --
251.74 0.742 2.88 -- 0.116 -- -- -- -0.112 14.9 -- -- -- --
248.17 0.734 2.85 -- -- 0.475 -- -- -0.00446 -- 1009 3167 -- --
252.51 0.742 2.88 -- -- -- -- -- -0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 234.72 humidity 50.0 10 < th dose independent rect. 16 1
2 234.76 atmosphere 1005.0 10 < th dose independent rect. 16 1
3 235.05 humidity 50.0 10 < th dose dependent rect. 16 1
4 235.25 temperature 30.0 10 > th dose independent rect. 16 1
5 235.27 temperature 30.0 10 > th dose dependent rect. 16 1
6 235.29 humidity 70.0 10 < th dose dependent rect. 16 1
9 236.14 wind 7.0 90 > th dose independent rect. 7 2
13 236.16 wind 7.0 90 > th dose dependent rect. 7 2
20 236.20 wind 7.0 90 > th dose independent rect. 1 8
21 236.20 wind 7.0 90 > th dose dependent rect. 1 8
25 236.63 radiation 10.0 10 > th dose independent rect. 16 1
29 237.51 wind 5.0 10 < th dose independent rect. 16 1
30 237.51 atmosphere 1005.0 10 < th dose independent rect. 20 1
35 239.31 temperature 30.0 90 > th dose independent rect. 15 2
46 239.73 radiation 1.0 10 > th dose dependent rect. 16 1
52 240.10 radiation 30.0 1440 > th dose independent rect. 16 1
68 240.20 wind 7.0 10 < th dose dependent rect. 16 1
74 240.69 humidity 80.0 10 > th dose dependent rect. 19 2
77 240.84 radiation 30.0 1440 > th dose dependent rect. 16 1
96 241.00 wind 1.0 720 < th dose dependent rect. 13 1
110 241.59 radiation 1.0 10 > th dose dependent rect. 16 15
113 241.64 wind 5.0 90 > th dose dependent rect. 22 13
119 241.86 atmosphere 1005.0 4320 < th dose independent rect. 18 1
121 241.90 wind 9.0 10 > th dose independent rect. 15 1
129 241.90 wind 9.0 10 > th dose dependent rect. 15 1
144 242.01 atmosphere 1000.0 10 < th dose independent rect. 5 1
149 242.01 atmosphere 1005.0 4320 > th dose independent rect. 18 2
152 242.01 atmosphere 1000.0 10 < th dose dependent rect. 5 1
162 242.03 wind 5.0 720 > th dose independent rect. 4 6
183 242.24 humidity 80.0 90 > th dose independent rect. 18 2
184 242.25 atmosphere 1010.0 10 < th dose dependent rect. 16 1
185 242.26 wind 3.0 720 > th dose dependent rect. 4 6
188 242.32 wind 5.0 90 > th dose dependent rect. 17 18
193 242.39 humidity 50.0 30 < th dose dependent rect. 13 4
197 242.41 temperature 30.0 90 > th dose dependent rect. 14 3
201 242.43 wind 7.0 90 > th dose independent rect. 17 18
203 242.47 atmosphere 995.0 4320 > th dose independent rect. 5 3
204 242.47 wind 5.0 90 > th dose independent rect. 22 13
265 242.92 wind 1.0 720 < th dose independent rect. 13 1
337 243.22 humidity 90.0 10 > th dose independent rect. 19 1
350 243.27 wind 5.0 720 > th dose independent rect. 9 1
376 243.44 wind 1.0 90 < th dose independent rect. 4 1
412 243.53 temperature 25.0 90 > th dose independent rect. 18 16
413 243.53 wind 9.0 30 > th dose dependent rect. 15 11
433 243.54 wind 9.0 30 > th dose dependent rect. 15 7
441 243.55 radiation 20.0 4320 > th dose independent rect. 8 1
491 243.70 wind 5.0 30 > th dose independent rect. 16 22
511 243.80 wind 1.0 90 < th dose dependent rect. 4 2
512 243.81 wind 5.0 30 < th dose independent rect. 7 22
528 243.89 wind 1.0 720 < th dose independent rect. 12 3
584 243.98 temperature 25.0 90 > th dose independent rect. 14 20
593 244.02 wind 9.0 10 < th dose independent rect. 17 23
594 244.02 atmosphere 1010.0 4320 < th dose dependent rect. 19 1
604 244.05 temperature 25.0 10 > th dose dependent rect. 18 16
610 244.07 wind 7.0 30 < th dose dependent rect. 7 22
624 244.12 wind 3.0 10 > th dose independent rect. 16 1
653 244.17 atmosphere 1000.0 10 > th dose independent rect. 16 1
680 244.21 temperature 25.0 90 > th dose dependent rect. 18 16
682 244.22 wind 5.0 1440 < th dose independent rect. 4 6
684 244.22 wind 5.0 720 < th dose independent rect. 3 8
691 244.23 atmosphere 1005.0 4320 > th dose independent rect. 11 11
710 244.26 radiation 1.0 1440 < th dose dependent rect. 24 5
727 244.29 temperature 25.0 10 < th dose dependent rect. 9 12
761 244.35 radiation 20.0 10 < th dose independent rect. 16 1
775 244.38 atmosphere 1005.0 4320 < th dose independent sin 18 NA
776 244.38 humidity 90.0 10 < th dose independent rect. 16 1
790 244.40 radiation 20.0 270 > th dose dependent rect. 6 1
797 244.40 radiation 1.0 1440 < th dose dependent rect. 22 7
818 244.43 atmosphere 1005.0 4320 > th dose independent sin 18 NA
833 244.44 atmosphere 1010.0 4320 < th dose dependent rect. 5 1
849 244.46 atmosphere 1010.0 4320 < th dose dependent rect. 3 3
850 244.46 atmosphere 1010.0 4320 < th dose dependent rect. 18 12
872 244.48 temperature 10.0 30 > th dose dependent rect. 17 23
892 244.50 atmosphere 1010.0 4320 < th dose dependent rect. 23 7
915 244.53 wind 5.0 90 > th dose dependent sin 8 NA
917 244.53 atmosphere 1010.0 4320 < th dose dependent rect. 18 6
961 244.56 temperature 25.0 10 > th dose independent rect. 19 15
963 244.56 atmosphere 1010.0 4320 < th dose dependent rect. 23 1
988 244.59 temperature 10.0 10 > th dose independent rect. 16 1
992 244.59 radiation 40.0 10 < th dose independent rect. 16 1
993 244.59 precipitation 0.1 10 < th dose independent rect. 16 1
997 244.59 temperature 10.0 10 > th dose independent rect. 17 23
998 244.59 precipitation 0.1 10 < th dose dependent rect. 16 1