Os03g0558000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0558000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.59 | 0.334 | 10.1 | 0.161 | 0.388 | -0.924 | 0.376 | -0.879 | 0.582 | 0.298 | 23.82 | 110 | -- | -- |
| 51.54 | 0.334 | 10.1 | 0.0348 | 0.381 | -0.809 | 0.247 | -- | 0.551 | 0.178 | 24.06 | 108 | -- | -- |
| 51.1 | 0.333 | 10.1 | 0.121 | 0.383 | -0.892 | -- | -0.656 | 0.58 | 0.109 | 23.8 | 106 | -- | -- |
| 51.59 | 0.335 | 10.1 | 0.0413 | 0.376 | -0.795 | -- | -- | 0.558 | 0.149 | 24.1 | 110 | -- | -- |
| 58.38 | 0.356 | 10.1 | 0.138 | -- | -0.714 | -- | -0.444 | 0.586 | -- | 24.2 | 298 | -- | -- |
| 60.2 | 0.364 | 10.1 | 0.236 | 0.272 | -- | 0.145 | -- | 0.688 | 23.6 | -- | -- | -- | -- |
| 60.29 | 0.364 | 10.1 | 0.23 | 0.272 | -- | -- | -- | 0.687 | 23.5 | -- | -- | -- | -- |
| 58.64 | 0.357 | 10.1 | 0.0746 | -- | -0.662 | -- | -- | 0.574 | -- | 24.23 | 301 | -- | -- |
| 51.63 | 0.335 | 10.1 | -- | 0.375 | -0.814 | -- | -- | 0.551 | 0.177 | 24.1 | 111 | -- | -- |
| 64.93 | 0.377 | 10.1 | 0.237 | -- | -- | -- | -- | 0.69 | -- | -- | -- | -- | -- |
| 61.68 | 0.367 | 10.1 | -- | 0.274 | -- | -- | -- | 0.662 | 23.6 | -- | -- | -- | -- |
| 58.77 | 0.357 | 10.1 | -- | -- | -0.694 | -- | -- | 0.562 | -- | 24.21 | 305 | -- | -- |
| 66.41 | 0.38 | 10.1 | -- | -- | -- | -- | -- | 0.664 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 4 | 50.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 11 |
| 6 | 50.60 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 21 |
| 8 | 50.66 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 9 | 50.73 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 24 | 51.03 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 21 |
| 31 | 51.06 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 38 | 51.14 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 59 | 51.30 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 71 | 51.36 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 91 | 51.41 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 92 | 51.43 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 106 | 51.48 | temperature | 25 | 90 | < th | dose dependent | sin | 8 | NA |
| 128 | 51.54 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 11 |
| 146 | 51.58 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 15 |
| 147 | 51.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 161 | 51.61 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 21 |
| 204 | 51.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 17 |
| 232 | 51.80 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 256 | 51.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 266 | 51.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 285 | 51.91 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 10 |
| 286 | 51.91 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 19 |
| 344 | 52.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 352 | 52.03 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 17 |
| 467 | 52.27 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 522 | 52.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 556 | 52.40 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 19 |
| 558 | 52.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 802 | 52.86 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 17 | 10 |
| 833 | 52.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 17 |
| 851 | 52.95 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 14 |
| 974 | 53.14 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 9 | 20 |
| 976 | 53.14 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |