Os03g0556900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0556900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 389.35 | 0.927 | 3.34 | 1.1 | 0.28 | -1.16 | -0.958 | 15.7 | -0.0776 | 15.4 | 31.4 | 4219 | -- | -- |
| 408.98 | 0.942 | 3.7 | -1.97 | 0.23 | 0.971 | -1.43 | -- | -0.436 | 15.7 | 14.78 | 47520 | -- | -- |
| 392.13 | 0.922 | 3.34 | 1.13 | 0.279 | -1.17 | -- | 15.9 | -0.0848 | 15.5 | 31.3 | 4236 | -- | -- |
| 412.39 | 0.946 | 3.7 | -1.98 | 0.215 | 0.964 | -- | -- | -0.433 | 15.8 | 14.6 | 47520 | -- | -- |
| 396.47 | 0.927 | 3.34 | 1.13 | -- | -1.2 | -- | 15.9 | -0.0945 | -- | 31.3 | 4221 | -- | -- |
| 421.01 | 0.962 | 3.65 | -1.12 | 0.211 | -- | -1.11 | -- | -0.187 | 15.4 | -- | -- | -- | -- |
| 424.82 | 0.965 | 3.65 | -1.14 | 0.21 | -- | -- | -- | -0.193 | 15.9 | -- | -- | -- | -- |
| 414.93 | 0.949 | 3.7 | -1.98 | -- | 0.959 | -- | -- | -0.437 | -- | 14.56 | 47520 | -- | -- |
| 443.24 | 0.981 | 3.58 | -- | 0.208 | -0.588 | -- | -- | 0.125 | 16 | 21.09 | 47520 | -- | -- |
| 427.23 | 0.966 | 3.65 | -1.14 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 458.83 | 1 | 3.62 | -- | 0.232 | -- | -- | -- | -0.0667 | 15.8 | -- | -- | -- | -- |
| 434.02 | 0.97 | 3.58 | -- | -- | -0.686 | -- | -- | 0.109 | -- | 35.42 | 47520 | -- | -- |
| 461.79 | 1 | 3.62 | -- | -- | -- | -- | -- | -0.0718 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 379.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 2 | 381.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 10 | 384.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 21 |
| 13 | 384.67 | humidity | 80 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 24 | 385.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 32 | 385.82 | humidity | 80 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 33 | 385.89 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 38 | 386.14 | humidity | 80 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 45 | 386.43 | humidity | 80 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 47 | 386.48 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 62 | 386.50 | humidity | 70 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 70 | 386.68 | humidity | 70 | 4320 | > th | dose dependent | rect. | 12 | 9 |
| 73 | 386.73 | humidity | 80 | 4320 | < th | dose independent | rect. | 12 | 9 |
| 83 | 386.97 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 86 | 387.00 | humidity | 70 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 89 | 387.02 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 117 | 387.34 | humidity | 80 | 4320 | > th | dose independent | rect. | 16 | 4 |
| 126 | 387.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 127 | 387.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 133 | 387.52 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 11 | 22 |
| 144 | 387.70 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 166 | 387.85 | humidity | 80 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 167 | 387.86 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 202 | 388.00 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 232 | 388.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 237 | 388.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 289 | 388.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 291 | 388.49 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 319 | 388.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 343 | 388.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 349 | 388.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 353 | 388.78 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 363 | 388.85 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 441 | 389.29 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 454 | 389.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 455 | 389.38 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 457 | 389.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 463 | 389.42 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 501 | 389.62 | wind | 1 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 536 | 389.84 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 554 | 389.96 | humidity | 70 | 4320 | > th | dose dependent | sin | 20 | NA |
| 558 | 389.99 | humidity | 90 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 560 | 390.00 | humidity | 80 | 4320 | < th | dose independent | rect. | 8 | 13 |
| 570 | 390.05 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 589 | 390.14 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 607 | 390.24 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 623 | 390.32 | humidity | 90 | 4320 | < th | dose dependent | rect. | 14 | 7 |
| 642 | 390.40 | humidity | 80 | 4320 | < th | dose independent | sin | 20 | NA |
| 685 | 390.55 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 689 | 390.58 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 697 | 390.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 716 | 390.75 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 18 | 19 |
| 717 | 390.75 | temperature | 15 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 754 | 390.88 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 775 | 390.94 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 19 | 18 |
| 779 | 390.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 790 | 390.99 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 804 | 391.03 | temperature | 15 | 4320 | > th | dose dependent | rect. | 11 | 4 |
| 811 | 391.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 870 | 391.21 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 885 | 391.26 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 905 | 391.29 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 24 | 11 |
| 912 | 391.31 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 929 | 391.34 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 10 |
| 949 | 391.39 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 19 | 21 |
| 972 | 391.46 | humidity | 80 | 4320 | > th | dose independent | sin | 20 | NA |