Os03g0556200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os03g0556200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.41 | 0.337 | 6.83 | 0.257 | 0.414 | 0.775 | 0.565 | 1.41 | 0.0528 | 17.6 | 20.36 | 1504 | -- | -- |
| 53.38 | 0.34 | 6.88 | -0.148 | 0.305 | 0.913 | 0.565 | -- | -0.0528 | 16.6 | 21.6 | 2036 | -- | -- |
| 52.02 | 0.336 | 6.83 | 0.257 | 0.387 | 0.78 | -- | 1.47 | 0.0613 | 18.1 | 20.37 | 1587 | -- | -- |
| 53.7 | 0.341 | 6.88 | -0.161 | 0.412 | 0.824 | -- | -- | -0.0559 | 17.9 | 21.4 | 1517 | -- | -- |
| 57.51 | 0.353 | 6.83 | 0.201 | -- | 0.867 | -- | 1.4 | 0.0323 | -- | 20.8 | 1935 | -- | -- |
| 77.13 | 0.412 | 6.84 | 0.15 | 0.392 | -- | 0.401 | -- | 0.139 | 18 | -- | -- | -- | -- |
| 77.47 | 0.412 | 6.84 | 0.145 | 0.395 | -- | -- | -- | 0.14 | 18.3 | -- | -- | -- | -- |
| 58.85 | 0.357 | 6.87 | -0.18 | -- | 0.927 | -- | -- | -0.0672 | -- | 21.88 | 1938 | -- | -- |
| 54.26 | 0.343 | 6.88 | -- | 0.407 | 0.776 | -- | -- | -0.0272 | 18 | 21.8 | 1534 | -- | -- |
| 85.58 | 0.432 | 6.83 | 0.135 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 78.03 | 0.413 | 6.84 | -- | 0.393 | -- | -- | -- | 0.124 | 18.3 | -- | -- | -- | -- |
| 59.62 | 0.36 | 6.87 | -- | -- | 0.877 | -- | -- | -0.034 | -- | 22.19 | 1932 | -- | -- |
| 86.05 | 0.433 | 6.83 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 17 | 51.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 22 |
| 22 | 51.50 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 33 | 51.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 34 | 51.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 35 | 51.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 40 | 51.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 44 | 51.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 95 | 51.66 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 139 | 51.78 | temperature | 20 | 1440 | > th | dose dependent | sin | 6 | NA |
| 141 | 51.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 152 | 51.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 12 |
| 153 | 51.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 15 |
| 184 | 51.87 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 216 | 51.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 226 | 52.00 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 240 | 52.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 255 | 52.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 256 | 52.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 271 | 52.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 19 |
| 311 | 52.21 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 323 | 52.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 16 |
| 340 | 52.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 362 | 52.26 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 364 | 52.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 436 | 52.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 459 | 52.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 468 | 52.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 485 | 52.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 518 | 52.39 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 559 | 52.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 611 | 52.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 687 | 52.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 786 | 52.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 19 |