Os03g0448900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0448900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.09 | 0.596 | 3.59 | 1.54 | 0.172 | 91.7 | 0.141 | 190 | 0.187 | 20.6 | 15.02 | 630 | -- | -- |
| 162.45 | 0.598 | 2.88 | 0.00766 | 0.159 | 1.82 | 0.253 | -- | 0.179 | 20.4 | 15.02 | 630 | -- | -- |
| 161.14 | 0.591 | 3.6 | 1.54 | 0.173 | 92 | -- | 191 | 0.183 | 20.7 | 15.03 | 622 | -- | -- |
| 161.78 | 0.592 | 2.88 | 0.0156 | 0.168 | 1.82 | -- | -- | 0.181 | 20.3 | 14.8 | 629 | -- | -- |
| 162.61 | 0.594 | 3.45 | 1.27 | -- | 93.3 | -- | 193 | 0.189 | -- | 14.9 | 617 | -- | -- |
| 168.71 | 0.609 | 2.88 | -0.0689 | 0.179 | -- | 0.0291 | -- | 0.16 | 21 | -- | -- | -- | -- |
| 168.72 | 0.608 | 2.88 | -0.07 | 0.179 | -- | -- | -- | 0.16 | 21.1 | -- | -- | -- | -- |
| 163.27 | 0.595 | 2.87 | 0.0209 | -- | 1.91 | -- | -- | 0.183 | -- | 14.77 | 629 | -- | -- |
| 161.78 | 0.592 | 2.88 | -- | 0.168 | 1.86 | -- | -- | 0.178 | 20.6 | 14.79 | 629 | -- | -- |
| 170.56 | 0.61 | 2.88 | -0.0696 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 168.85 | 0.608 | 2.88 | -- | 0.179 | -- | -- | -- | 0.168 | 21.1 | -- | -- | -- | -- |
| 163.28 | 0.595 | 2.87 | -- | -- | 1.9 | -- | -- | 0.18 | -- | 14.77 | 627 | -- | -- |
| 170.69 | 0.61 | 2.88 | -- | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.45 | humidity | 50.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 2 | 149.93 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 3 | 149.95 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 5 | 150.04 | temperature | 30.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 10 | 151.10 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 11 | 151.17 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 13 | 151.90 | wind | 5.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 14 | 152.94 | wind | 7.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 16 | 153.50 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 22 | 156.08 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 32 | 157.10 | humidity | 90.0 | 720 | > th | dose independent | rect. | 14 | 1 |
| 37 | 157.35 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 1 |
| 38 | 157.35 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 45 | 157.78 | temperature | 15.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 52 | 158.35 | humidity | 50.0 | 30 | < th | dose dependent | rect. | 12 | 5 |
| 59 | 158.55 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 78 | 158.64 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 83 | 159.00 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 97 | 159.04 | wind | 3.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 99 | 159.15 | radiation | 20.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 100 | 159.21 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 126 | 159.46 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 130 | 159.46 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 131 | 159.46 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 1 |
| 134 | 159.46 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 142 | 159.58 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 143 | 159.59 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 8 |
| 161 | 159.69 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 162 | 159.69 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 14 | 2 |
| 164 | 159.72 | wind | 9.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 173 | 159.90 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 174 | 159.90 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 182 | 160.00 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 192 | 160.08 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 262 | 160.64 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 266 | 160.67 | temperature | 15.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 272 | 160.71 | temperature | 15.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 284 | 160.71 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 306 | 160.78 | humidity | 50.0 | 90 | < th | dose independent | rect. | 11 | 6 |
| 333 | 160.86 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 341 | 160.92 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 342 | 160.92 | temperature | 15.0 | 720 | > th | dose independent | rect. | 11 | 8 |
| 346 | 160.95 | temperature | 15.0 | 720 | > th | dose independent | rect. | 13 | 16 |
| 394 | 161.14 | humidity | 50.0 | 10 | < th | dose independent | rect. | 12 | 5 |
| 395 | 161.14 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 6 |
| 431 | 161.26 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 23 |
| 456 | 161.31 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 458 | 161.32 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 463 | 161.39 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 8 | 8 |
| 588 | 161.51 | temperature | 15.0 | 720 | > th | dose independent | sin | 18 | NA |
| 590 | 161.52 | temperature | 15.0 | 720 | > th | dose independent | rect. | 7 | 16 |
| 595 | 161.57 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 596 | 161.57 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 599 | 161.59 | temperature | 15.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 617 | 161.65 | temperature | 15.0 | 720 | < th | dose independent | sin | 18 | NA |
| 630 | 161.66 | humidity | 50.0 | 90 | < th | dose independent | sin | 5 | NA |
| 640 | 161.68 | humidity | 50.0 | 90 | > th | dose independent | rect. | 11 | 9 |
| 712 | 161.76 | humidity | 90.0 | 90 | > th | dose independent | rect. | 22 | 1 |
| 742 | 161.81 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 775 | 161.86 | temperature | 15.0 | 720 | > th | dose independent | rect. | 11 | 18 |
| 811 | 161.95 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 824 | 161.97 | temperature | 15.0 | 720 | > th | dose independent | sin | 21 | NA |
| 880 | 162.06 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 12 |
| 897 | 162.07 | temperature | 15.0 | 720 | < th | dose dependent | no | NA | NA |
| 904 | 162.07 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 943 | 162.14 | temperature | 15.0 | 720 | < th | dose dependent | sin | 0 | NA |
| 968 | 162.18 | temperature | 15.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 973 | 162.18 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 984 | 162.21 | humidity | 50.0 | 90 | > th | dose independent | sin | 2 | NA |
| 987 | 162.21 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 15 |