Os03g0441400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0441400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.79 | 0.455 | 6.49 | 1.4 | 1.93 | 1.47 | -0.234 | -1.33 | 0.132 | 18.9 | 26.2 | 87 | -- | -- |
| 96.57 | 0.458 | 6.51 | 1.24 | 1.89 | 1.56 | -0.198 | -- | 0.0939 | 18.9 | 25.71 | 95 | -- | -- |
| 93.91 | 0.451 | 6.49 | 1.4 | 1.92 | 1.48 | -- | -1.29 | 0.133 | 18.9 | 26.1 | 80 | -- | -- |
| 96.51 | 0.458 | 6.51 | 1.19 | 1.91 | 1.56 | -- | -- | 0.0798 | 18.9 | 25.8 | 87 | -- | -- |
| 265.29 | 0.763 | 6.47 | 1.26 | -- | 1.49 | -- | -1.01 | 0.000121 | -- | 24.07 | 12 | -- | -- |
| 131.18 | 0.537 | 6.59 | 0.799 | 1.81 | -- | -0.376 | -- | -0.251 | 19.6 | -- | -- | -- | -- |
| 131.57 | 0.537 | 6.59 | 0.809 | 1.81 | -- | -- | -- | -0.251 | 19.5 | -- | -- | -- | -- |
| 266.77 | 0.764 | 6.49 | 1.13 | -- | 1.58 | -- | -- | -0.0253 | -- | 24.1 | 10 | -- | -- |
| 129.79 | 0.533 | 6.56 | -- | 1.82 | 1.07 | -- | -- | -0.141 | 19 | 25.8 | 87 | -- | -- |
| 307.13 | 0.819 | 6.55 | 0.782 | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
| 148.8 | 0.571 | 6.61 | -- | 1.8 | -- | -- | -- | -0.341 | 19.6 | -- | -- | -- | -- |
| 297.98 | 0.807 | 6.53 | -- | -- | 1.21 | -- | -- | -0.205 | -- | 24 | 2 | -- | -- |
| 323.25 | 0.839 | 6.56 | -- | -- | -- | -- | -- | -0.366 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.64 | temperature | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 2 | 89.40 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 5 | 89.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 20 | 91.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 29 | 92.31 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 41 | 93.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 53 | 94.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 12 |
| 66 | 94.45 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 78 | 94.88 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 80 | 94.90 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 82 | 94.91 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 87 | 94.97 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 89 | 95.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 90 | 95.02 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 100 | 95.15 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 107 | 95.24 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 108 | 95.24 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 109 | 95.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 117 | 95.33 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 129 | 95.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 136 | 95.47 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 141 | 95.51 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 18 |
| 150 | 95.60 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 161 | 95.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 172 | 95.79 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 183 | 95.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 266 | 96.61 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 413 | 98.23 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 16 |
| 518 | 99.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 618 | 99.65 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 11 |
| 625 | 99.67 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 21 |
| 715 | 100.16 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 759 | 100.30 | humidity | 60 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 762 | 100.31 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 792 | 100.46 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 873 | 100.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 946 | 101.05 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 14 |