Os03g0440900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LRR protein.
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Os03g0440900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LRR protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.05 | 0.345 | 13.4 | 0.0438 | 0.511 | -0.508 | 0.106 | 0.395 | 0.224 | 2.61 | 1004 | 42 | -- | -- |
| 54.3 | 0.343 | 13.4 | 0.0526 | 0.514 | -0.511 | 0.105 | -- | 0.222 | 2.62 | 1004 | 40 | -- | -- |
| 54.08 | 0.343 | 13.4 | 0.0391 | 0.511 | -0.507 | -- | 0.404 | 0.224 | 2.66 | 1004 | 40 | -- | -- |
| 54.33 | 0.343 | 13.4 | 0.0513 | 0.514 | -0.511 | -- | -- | 0.222 | 2.65 | 1004 | 37 | -- | -- |
| 68.1 | 0.384 | 13.4 | 0.037 | -- | -0.515 | -- | 0.374 | 0.246 | -- | 1005 | 594 | -- | -- |
| 58.31 | 0.358 | 13.4 | 0.0662 | 0.503 | -- | 0.0684 | -- | 0.131 | 2.38 | -- | -- | -- | -- |
| 58.32 | 0.358 | 13.4 | 0.0643 | 0.504 | -- | -- | -- | 0.13 | 2.41 | -- | -- | -- | -- |
| 68.36 | 0.385 | 13.4 | 0.0502 | -- | -0.529 | -- | -- | 0.248 | -- | 1005 | 596 | -- | -- |
| 54.4 | 0.344 | 13.4 | -- | 0.516 | -0.512 | -- | -- | 0.217 | 2.65 | 1004 | 36 | -- | -- |
| 73.32 | 0.4 | 13.4 | 0.0856 | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
| 58.43 | 0.358 | 13.4 | -- | 0.505 | -- | -- | -- | 0.123 | 2.41 | -- | -- | -- | -- |
| 68.42 | 0.385 | 13.4 | -- | -- | -0.534 | -- | -- | 0.243 | -- | 1005 | 615 | -- | -- |
| 73.52 | 0.4 | 13.4 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.95 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 6 | 49.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 7 | 49.69 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 61 | 51.16 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 70 | 51.21 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 74 | 51.24 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 76 | 51.24 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 78 | 51.24 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 129 | 51.24 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 133 | 51.24 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 185 | 51.39 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 187 | 51.42 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 189 | 51.44 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 192 | 51.47 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 193 | 51.47 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 194 | 51.47 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 201 | 51.49 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 203 | 51.50 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 208 | 51.52 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 214 | 51.53 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 23 | 10 |
| 219 | 51.56 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 223 | 51.57 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 224 | 51.57 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 226 | 51.58 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 227 | 51.58 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 234 | 51.60 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 235 | 51.60 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 236 | 51.60 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 265 | 51.72 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 269 | 51.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 277 | 51.77 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 282 | 51.78 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 286 | 51.79 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 293 | 51.80 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 294 | 51.80 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 329 | 51.90 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 330 | 51.91 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 335 | 51.91 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 351 | 51.95 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 391 | 52.04 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 392 | 52.05 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 405 | 52.09 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 407 | 52.09 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 415 | 52.12 | wind | 5.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 432 | 52.15 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 436 | 52.16 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 440 | 52.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 442 | 52.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 456 | 52.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 479 | 52.31 | wind | 5.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 489 | 52.33 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 508 | 52.36 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 519 | 52.38 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 535 | 52.44 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 543 | 52.46 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 6 |
| 547 | 52.47 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 9 |
| 550 | 52.48 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 552 | 52.49 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 565 | 52.50 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 569 | 52.50 | humidity | 70.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 575 | 52.51 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 601 | 52.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 693 | 52.65 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 721 | 52.68 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 728 | 52.69 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 15 | 18 |
| 746 | 52.72 | atmosphere | 1005.0 | 270 | > th | dose independent | sin | 12 | NA |
| 799 | 52.77 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 827 | 52.80 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 828 | 52.80 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 830 | 52.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 840 | 52.82 | temperature | 20.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 848 | 52.83 | temperature | 20.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 874 | 52.85 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 883 | 52.86 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 16 | 9 |
| 922 | 52.90 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 22 | 14 |
| 963 | 52.93 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 972 | 52.93 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 22 | 22 |