Os03g0439900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase aspartic, catalytic domain containing protein.
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Os03g0439900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase aspartic, catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.41 | 0.413 | 8.68 | 0.675 | 2.05 | 0.0256 | 0.762 | 3.49 | 0.49 | 7.1 | 26.31 | 3340 | -- | -- |
| 83.91 | 0.427 | 8.78 | -0.259 | 2.06 | 0.282 | 0.781 | -- | 0.325 | 7.06 | 32 | 5411 | -- | -- |
| 78.01 | 0.411 | 8.68 | 0.752 | 2.04 | 0.0175 | -- | 3.27 | 0.5 | 7.08 | 26.3 | 2942 | -- | -- |
| 84.53 | 0.428 | 8.79 | -0.311 | 2.08 | 0.383 | -- | -- | 0.33 | 7.12 | 31.4 | 2561 | -- | -- |
| 295.77 | 0.801 | 8.71 | 1.07 | -- | -0.0326 | -- | 4.25 | 0.596 | -- | 26.91 | 2840 | -- | -- |
| 88.25 | 0.44 | 8.8 | -0.235 | 2.07 | -- | 0.656 | -- | 0.262 | 7.07 | -- | -- | -- | -- |
| 89.36 | 0.443 | 8.8 | -0.223 | 2.07 | -- | -- | -- | 0.26 | 7.04 | -- | -- | -- | -- |
| 302.56 | 0.814 | 8.83 | -0.091 | -- | -0.384 | -- | -- | 0.354 | -- | 26.91 | 2840 | -- | -- |
| 86.95 | 0.434 | 8.78 | -- | 2.06 | 0.291 | -- | -- | 0.34 | 7.11 | 31.5 | 2561 | -- | -- |
| 315.97 | 0.831 | 8.84 | -0.182 | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
| 90.67 | 0.445 | 8.79 | -- | 2.07 | -- | -- | -- | 0.285 | 7.05 | -- | -- | -- | -- |
| 302.77 | 0.813 | 8.83 | -- | -- | -0.39 | -- | -- | 0.365 | -- | 26.91 | 2840 | -- | -- |
| 316.84 | 0.831 | 8.84 | -- | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.31 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 21 | 6 |
| 2 | 77.55 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 4 | 77.63 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 5 | 77.63 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 7 | 77.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 8 | 77.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 8 |
| 9 | 77.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 15 | 77.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 16 | 77.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 26 | 77.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 28 | 77.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 30 | 77.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 33 | 77.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 35 | 77.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 38 | 77.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 46 | 77.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 51 | 77.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 53 | 77.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 12 |
| 68 | 77.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 71 | 77.91 | temperature | 20 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 83 | 77.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 10 |
| 88 | 77.96 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 89 | 77.96 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 99 | 77.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 104 | 77.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 131 | 78.00 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 142 | 78.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 6 |
| 156 | 78.01 | temperature | 25 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 177 | 78.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 178 | 78.02 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 179 | 78.02 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 16 |
| 248 | 78.03 | radiation | 1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 250 | 78.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 274 | 78.04 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 276 | 78.04 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 319 | 78.05 | radiation | 1 | 43200 | > th | dose independent | sin | 19 | NA |
| 321 | 78.05 | radiation | 1 | 43200 | < th | dose independent | sin | 19 | NA |
| 387 | 78.09 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 395 | 78.10 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 407 | 78.10 | temperature | 20 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 408 | 78.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 431 | 78.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 436 | 78.12 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 503 | 78.14 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 513 | 78.15 | temperature | 25 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 556 | 78.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 639 | 78.19 | temperature | 25 | 43200 | > th | dose independent | rect. | 11 | 12 |
| 749 | 78.24 | temperature | 30 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 807 | 78.27 | temperature | 20 | 43200 | > th | dose dependent | sin | 15 | NA |
| 821 | 78.28 | temperature | 25 | 43200 | < th | dose independent | sin | 18 | NA |
| 823 | 78.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 864 | 78.30 | temperature | 25 | 43200 | > th | dose independent | sin | 19 | NA |
| 886 | 78.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |