Os03g0439500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os03g0439500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 943.88 | 1.44 | 6.86 | -6.6 | 3.69 | 4.39 | -2.37 | -9.36 | -0.972 | 16 | 27 | 1132 | 9.33 | -- |
| 956.08 | 1.44 | 6.65 | -4.74 | 3.76 | 3.47 | -2.13 | -- | -0.719 | 16 | 26.71 | 1084 | 9 | -- |
| 957.8 | 1.44 | 6.84 | -6.42 | 3.72 | 4.35 | -- | -8.41 | -0.91 | 16.1 | 27.03 | 1140 | 8.68 | -- |
| 966.45 | 1.45 | 6.65 | -4.79 | 3.71 | 3.48 | -- | -- | -0.696 | 16.1 | 26.87 | 1091 | 8.52 | -- |
| 1439.73 | 1.77 | 6.92 | -6.47 | -- | 4.39 | -- | -6.05 | -1.65 | -- | 25.58 | 1831 | 14.7 | -- |
| 1404.07 | 1.76 | 6.68 | -3.88 | 3.04 | -- | -2.9 | -- | -0.864 | 16.3 | -- | -- | -- | -- |
| 1424.48 | 1.77 | 6.69 | -3.91 | 3.04 | -- | -- | -- | -0.88 | 16.6 | -- | -- | -- | -- |
| 1177.56 | 1.6 | 6.74 | -5.24 | -- | 6.38 | -- | -- | -1.4 | -- | -11.44 | 1729 | 16.1 | -- |
| 1536.93 | 1.83 | 6.52 | -- | 3.61 | 2.72 | -- | -- | -0.104 | 16.2 | 27.6 | 1058 | 7.12 | -- |
| 1918.11 | 2.05 | 6.67 | -4.02 | -- | -- | -- | -- | -0.959 | -- | -- | -- | -- | -- |
| 1826.79 | 2 | 6.6 | -- | 3.12 | -- | -- | -- | -0.444 | 16.6 | -- | -- | -- | -- |
| 1779.22 | 1.96 | 6.5 | -- | -- | 4.52 | -- | -- | -0.581 | -- | -66.62 | 1727 | 16.1 | -- |
| 2345.29 | 2.26 | 6.57 | -- | -- | -- | -- | -- | -0.513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 999.93 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 2 | 1001.52 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 4 | 1002.02 | temperature | 30 | 1440 | > th | dose dependent | sin | 11 | NA |
| 9 | 1002.98 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 14 | 1003.90 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 34 | 1005.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 50 | 1005.49 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 74 | 1006.27 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 85 | 1006.60 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 99 | 1006.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 108 | 1007.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 109 | 1007.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 110 | 1007.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 111 | 1007.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 120 | 1007.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 131 | 1008.73 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 213 | 1010.27 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 358 | 1012.00 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 404 | 1013.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 407 | 1013.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 408 | 1013.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 409 | 1013.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 410 | 1013.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 446 | 1015.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 447 | 1015.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 450 | 1015.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 451 | 1015.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 454 | 1015.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 456 | 1015.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 21 |
| 462 | 1015.43 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 465 | 1015.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 478 | 1015.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 551 | 1016.07 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 584 | 1016.50 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 600 | 1016.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 606 | 1016.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 611 | 1016.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 685 | 1018.84 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 889 | 1020.51 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 891 | 1020.57 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 4 |