Os03g0438100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Allene oxide cyclase precursor (EC 5.3.99.6) (Allene oxide cylase).
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Os03g0438100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Allene oxide cyclase precursor (EC 5.3.99.6) (Allene oxide cylase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.09 | 0.336 | 12.3 | 0.146 | 0.697 | 2.93 | -0.692 | 6.97 | 0.297 | 13.1 | 6.583 | 464 | -- | -- |
| 56.42 | 0.35 | 12.2 | 0.0444 | 0.608 | 2.34 | -0.978 | -- | 0.311 | 13.6 | 8.481 | 405 | -- | -- |
| 53.02 | 0.339 | 12.3 | 0.121 | 0.691 | 2.91 | -- | 7 | 0.289 | 12.9 | 6.45 | 464 | -- | -- |
| 54.55 | 0.344 | 12.2 | -0.0227 | 0.69 | 1.47 | -- | -- | 0.305 | 13.3 | 8.7 | 535 | -- | -- |
| 79.78 | 0.416 | 12.3 | 0.131 | -- | 3.05 | -- | 5.5 | 0.273 | -- | 6.905 | 259 | -- | -- |
| 60.24 | 0.364 | 12.2 | -0.105 | 0.692 | -- | -0.741 | -- | 0.267 | 13.7 | -- | -- | -- | -- |
| 62.37 | 0.37 | 12.2 | -0.129 | 0.691 | -- | -- | -- | 0.262 | 13.6 | -- | -- | -- | -- |
| 81.04 | 0.419 | 12.3 | 0.057 | -- | 1.81 | -- | -- | 0.296 | -- | 7.738 | 157 | -- | -- |
| 54.51 | 0.344 | 12.2 | -- | 0.693 | 1.44 | -- | -- | 0.306 | 13.3 | 8.7 | 571 | -- | -- |
| 91.52 | 0.447 | 12.2 | -0.157 | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
| 62.82 | 0.371 | 12.2 | -- | 0.693 | -- | -- | -- | 0.277 | 13.6 | -- | -- | -- | -- |
| 74.88 | 0.403 | 12.2 | -- | -- | 0.853 | -- | -- | 0.276 | -- | 1.543 | 86 | -- | -- |
| 92.17 | 0.448 | 12.2 | -- | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.05 | wind | 9 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 4 | 51.10 | wind | 9 | 270 | > th | dose dependent | sin | 10 | NA |
| 7 | 51.19 | wind | 9 | 720 | > th | dose dependent | rect. | 10 | 6 |
| 8 | 51.22 | wind | 9 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 9 | 51.24 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 12 | 51.25 | wind | 9 | 720 | > th | dose independent | rect. | 20 | 20 |
| 24 | 51.31 | wind | 9 | 270 | > th | dose independent | sin | 10 | NA |
| 45 | 51.47 | wind | 9 | 720 | > th | dose independent | rect. | 10 | 6 |
| 46 | 51.48 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 15 |
| 61 | 51.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 80 | 51.68 | wind | 9 | 720 | > th | dose dependent | sin | 4 | NA |
| 81 | 51.69 | wind | 9 | 720 | < th | dose independent | sin | 4 | NA |
| 93 | 51.79 | wind | 9 | 720 | > th | dose independent | sin | 4 | NA |
| 115 | 51.97 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 128 | 52.01 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 13 |
| 129 | 52.01 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 135 | 52.04 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 141 | 52.06 | wind | 7 | 270 | > th | dose dependent | sin | 16 | NA |
| 145 | 52.06 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 18 |
| 171 | 52.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 179 | 52.14 | wind | 9 | 720 | > th | dose independent | rect. | 12 | 1 |
| 180 | 52.15 | wind | 9 | 720 | > th | dose independent | rect. | 15 | 1 |
| 204 | 52.26 | temperature | 25 | 30 | > th | dose dependent | sin | 21 | NA |
| 210 | 52.29 | wind | 7 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 213 | 52.30 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 216 | 52.32 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 235 | 52.37 | wind | 9 | 270 | < th | dose independent | sin | 12 | NA |
| 246 | 52.40 | wind | 5 | 720 | > th | dose dependent | rect. | 8 | 8 |
| 259 | 52.43 | wind | 7 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 264 | 52.44 | wind | 7 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 274 | 52.45 | wind | 7 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 277 | 52.46 | wind | 5 | 720 | > th | dose dependent | rect. | 11 | 3 |
| 306 | 52.48 | wind | 7 | 270 | > th | dose dependent | no | NA | NA |
| 323 | 52.48 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 21 |
| 340 | 52.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 410 | 52.57 | wind | 9 | 720 | < th | dose independent | no | NA | NA |
| 426 | 52.58 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 16 |
| 444 | 52.60 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 483 | 52.66 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 17 |
| 544 | 52.71 | wind | 9 | 720 | > th | dose independent | rect. | 10 | 12 |
| 605 | 52.74 | wind | 9 | 720 | > th | dose independent | no | NA | NA |
| 736 | 52.79 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 21 |
| 737 | 52.79 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 23 |
| 744 | 52.80 | wind | 9 | 270 | < th | dose independent | sin | 10 | NA |
| 870 | 52.85 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 23 |