Os03g0438000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0438000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.12 | 0.342 | 8.49 | 0.568 | 1.69 | 1.44 | -0.178 | 2.47 | -0.0354 | 5.62 | 10.33 | 8 | -- | -- |
| 55.7 | 0.35 | 8.53 | 0.278 | 1.72 | 1.2 | -0.53 | -- | -0.117 | 5.56 | 21.9 | 18 | -- | -- |
| 52.98 | 0.342 | 8.49 | 0.581 | 1.69 | 1.45 | -- | 2.57 | -0.0316 | 5.61 | 10.1 | 7 | -- | -- |
| 56.08 | 0.349 | 8.53 | 0.265 | 1.73 | 1.22 | -- | -- | -0.121 | 5.59 | 21.9 | 14 | -- | -- |
| 181.06 | 0.63 | 8.49 | 0.809 | -- | 0.204 | -- | 1.9 | 0.155 | -- | 18.7 | 2 | -- | -- |
| 78.86 | 0.416 | 8.49 | 0.522 | 1.44 | -- | -0.494 | -- | 0.0783 | 6.42 | -- | -- | -- | -- |
| 79.43 | 0.417 | 8.49 | 0.516 | 1.44 | -- | -- | -- | 0.0803 | 6.48 | -- | -- | -- | -- |
| 184.86 | 0.633 | 8.52 | 0.494 | -- | 0.287 | -- | -- | 0.0643 | -- | 18.6 | 2 | -- | -- |
| 57.81 | 0.354 | 8.54 | -- | 1.76 | 1.31 | -- | -- | -0.164 | 5.54 | 21.79 | 14 | -- | -- |
| 186.6 | 0.638 | 8.51 | 0.553 | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
| 86.46 | 0.435 | 8.5 | -- | 1.44 | -- | -- | -- | 0.0228 | 6.46 | -- | -- | -- | -- |
| 190.8 | 0.643 | 8.54 | -- | -- | 0.502 | -- | -- | -0.00809 | -- | 14.41 | 2 | -- | -- |
| 194.65 | 0.651 | 8.53 | -- | -- | -- | -- | -- | 0.049 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 3 | 48.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 15 | 51.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 22 | 51.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 27 | 51.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 36 | 52.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 37 | 52.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 70 | 53.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 72 | 53.17 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 80 | 53.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 82 | 53.29 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 88 | 53.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 95 | 53.49 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 100 | 53.57 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 121 | 53.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 129 | 53.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 133 | 53.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 164 | 54.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 171 | 54.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 177 | 54.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 232 | 54.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 237 | 54.78 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 325 | 55.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 382 | 55.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 389 | 55.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 438 | 55.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 467 | 55.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 529 | 56.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 19 |
| 552 | 56.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 564 | 56.36 | temperature | 20 | 90 | > th | dose dependent | sin | 0 | NA |
| 605 | 56.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 609 | 56.51 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 643 | 56.60 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 661 | 56.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 955 | 57.33 | temperature | 25 | 720 | < th | dose independent | rect. | 21 | 16 |
| 957 | 57.33 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 962 | 57.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 997 | 57.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 21 |