Os03g0436600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os03g0436600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.24 | 0.48 | 9.24 | 0.729 | 0.96 | -2.67 | -0.216 | 0.374 | -0.153 | 11.9 | 15.63 | 295 | -- | -- |
| 103.98 | 0.475 | 9.25 | 0.677 | 0.894 | -2.6 | -0.169 | -- | -0.154 | 11.9 | 15.96 | 334 | -- | -- |
| 103.99 | 0.475 | 9.25 | 0.707 | 0.883 | -2.64 | -- | 0.345 | -0.152 | 12 | 15.85 | 344 | -- | -- |
| 104.07 | 0.475 | 9.25 | 0.663 | 0.87 | -2.64 | -- | -- | -0.168 | 11.9 | 15.55 | 344 | -- | -- |
| 119.35 | 0.509 | 9.24 | 0.913 | -- | -2.92 | -- | 0.596 | -0.0956 | -- | 15.53 | 657 | -- | -- |
| 187.37 | 0.642 | 9.33 | 0.0498 | 1.09 | -- | 0.336 | -- | -0.573 | 8.77 | -- | -- | -- | -- |
| 187.74 | 0.642 | 9.33 | 0.0615 | 1.09 | -- | -- | -- | -0.572 | 8.82 | -- | -- | -- | -- |
| 119.43 | 0.509 | 9.26 | 0.761 | -- | -2.74 | -- | -- | -0.121 | -- | 16.2 | 668 | -- | -- |
| 114.24 | 0.498 | 9.28 | -- | 0.854 | -2.23 | -- | -- | -0.279 | 11.5 | 16.79 | 346 | -- | -- |
| 255.22 | 0.746 | 9.36 | 0.0623 | -- | -- | -- | -- | -0.564 | -- | -- | -- | -- | -- |
| 187.84 | 0.641 | 9.33 | -- | 1.09 | -- | -- | -- | -0.579 | 8.82 | -- | -- | -- | -- |
| 133.27 | 0.538 | 9.29 | -- | -- | -2.39 | -- | -- | -0.243 | -- | 17 | 650 | -- | -- |
| 255.32 | 0.746 | 9.36 | -- | -- | -- | -- | -- | -0.571 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 3 | 102.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 4 | 102.95 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 5 | 102.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 7 | 103.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 13 | 103.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 14 | 103.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 26 | 103.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 5 |
| 57 | 103.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 108 | 104.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 127 | 104.33 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 149 | 104.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 160 | 104.47 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 213 | 104.74 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 338 | 105.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 340 | 105.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 362 | 105.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 387 | 105.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 435 | 105.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 460 | 105.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 470 | 105.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 509 | 105.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 520 | 105.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 540 | 106.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 559 | 106.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 710 | 106.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 711 | 106.57 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 731 | 106.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 769 | 106.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 809 | 106.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 863 | 106.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 904 | 107.09 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |