Os03g0436500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, BED-type predicted domain containing protein.
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Os03g0436500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, BED-type predicted domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.89 | 0.384 | 3.09 | 0.0598 | 0.0305 | 0.59 | -0.282 | -0.733 | 0.0691 | 22.6 | 22.64 | 678 | -- | -- |
| 67.52 | 0.383 | 3.1 | 0.0297 | 0.0402 | 0.725 | -0.116 | -- | 0.0585 | 22.4 | 22.51 | 706 | -- | -- |
| 67.11 | 0.382 | 3.1 | 0.0299 | 0.0501 | 0.608 | -- | -0.559 | 0.0584 | 1.43 | 22.42 | 665 | -- | -- |
| 67.34 | 0.382 | 3.11 | 0.00191 | 0.0529 | 0.884 | -- | -- | 0.037 | 1.17 | 20.45 | 667 | -- | -- |
| 67.21 | 0.382 | 3.09 | 0.0456 | -- | 0.619 | -- | -0.544 | 0.0631 | -- | 22.43 | 614 | -- | -- |
| 73.41 | 0.402 | 3.12 | -0.199 | 0.0568 | -- | 0.118 | -- | -0.0495 | 7.35 | -- | -- | -- | -- |
| 73.44 | 0.401 | 3.12 | -0.196 | 0.058 | -- | -- | -- | -0.0499 | 6.83 | -- | -- | -- | -- |
| 67.49 | 0.383 | 3.11 | -0.00927 | -- | 0.87 | -- | -- | 0.0319 | -- | 20.54 | 613 | -- | -- |
| 67.31 | 0.382 | 3.11 | -- | 0.0586 | 0.893 | -- | -- | 0.0322 | 2.43 | 20.37 | 671 | -- | -- |
| 73.62 | 0.401 | 3.13 | -0.195 | -- | -- | -- | -- | -0.0488 | -- | -- | -- | -- | -- |
| 74.46 | 0.404 | 3.12 | -- | 0.0558 | -- | -- | -- | -0.0281 | 7.04 | -- | -- | -- | -- |
| 67.49 | 0.383 | 3.11 | -- | -- | 0.877 | -- | -- | 0.0332 | -- | 20.56 | 601 | -- | -- |
| 74.62 | 0.403 | 3.12 | -- | -- | -- | -- | -- | -0.0272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.63 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 8 | 65.51 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 9 | 65.51 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 26 | 65.97 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 29 | 66.03 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 31 | 66.08 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 13 |
| 36 | 66.20 | wind | 1.0 | 30 | < th | dose dependent | rect. | 1 | 2 |
| 48 | 66.39 | wind | 1.0 | 10 | < th | dose independent | rect. | 1 | 2 |
| 50 | 66.39 | temperature | 15.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 55 | 66.41 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 18 |
| 57 | 66.42 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 75 | 66.51 | temperature | 10.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 89 | 66.55 | temperature | 20.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 112 | 66.59 | temperature | 30.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 143 | 66.67 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 192 | 66.78 | wind | 1.0 | 10 | < th | dose independent | rect. | 17 | 10 |
| 198 | 66.79 | wind | 1.0 | 10 | < th | dose independent | rect. | 21 | 6 |
| 274 | 66.92 | wind | 1.0 | 30 | < th | dose dependent | rect. | 21 | 6 |
| 427 | 67.10 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 428 | 67.10 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 455 | 67.12 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 459 | 67.12 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 483 | 67.14 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 484 | 67.14 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 8 |
| 497 | 67.15 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 500 | 67.15 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 503 | 67.15 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 504 | 67.15 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 506 | 67.15 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 511 | 67.15 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 514 | 67.15 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 515 | 67.15 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 517 | 67.15 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 522 | 67.15 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 523 | 67.15 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 564 | 67.18 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 569 | 67.19 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 578 | 67.20 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 606 | 67.22 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 616 | 67.23 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 617 | 67.24 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 634 | 67.25 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 649 | 67.27 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 685 | 67.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 12 |
| 708 | 67.32 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 729 | 67.34 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 1 |
| 798 | 67.41 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 18 |
| 799 | 67.41 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 834 | 67.44 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 835 | 67.44 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 852 | 67.45 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 880 | 67.46 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 16 |
| 883 | 67.46 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 903 | 67.47 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 931 | 67.49 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 932 | 67.49 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 20 |
| 945 | 67.51 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 951 | 67.51 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 985 | 67.55 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 16 |
| 999 | 67.55 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 23 |