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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0435300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.74 (0.0564) R2 : 0.815
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.25 (0.185) R2dC : 0.382 R2C : 0.661
β3 : 3.07 (0.231) R2dE : 0.127 R2E : 0.415
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.845 (0.118) R2dN8 : 0.0271 R2N8 : 0.0175
σ : 1.06
deviance : 514.28
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_____
C
peak time of C : 21.3
E
wheather : radiation
threshold : 11.22
memory length : 6
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 14.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
504.63 1.06 5.75 -0.127 4.39 3.04 -2.34 1.82 0.851 21.3 11.98 10 15 --
506.37 1.05 5.74 -0.215 4.23 3.11 -1.79 -- 0.828 21.3 11.69 6 14.6 --
517.66 1.06 5.77 -0.201 4.25 3.13 -- 0.157 0.868 21.3 11.98 8 14.8 --
514.3 1.06 5.74 -0.0596 4.25 3.07 -- -- 0.858 21.3 11.51 6 14.7 --
578.06 1.12 5.55 0.134 -- 5.96 -- -0.551 1.01 -- 26.77 10 10.7 --
664.43 1.21 5.8 -0.116 6.02 -- -1.2 -- 0.862 20.7 -- -- -- --
669.21 1.21 5.79 -0.0755 6.02 -- -- -- 0.863 20.7 -- -- -- --
571.11 1.11 5.6 -0.00477 -- 5.92 -- -- 0.986 -- 50.41 10 10.2 --
514.28 1.06 5.74 -- 4.25 3.07 -- -- 0.845 21.3 11.22 6 14.7 --
2722.16 2.44 5.63 -0.0864 -- -- -- -- 0.814 -- -- -- -- --
669.36 1.21 5.79 -- 6.02 -- -- -- 0.872 20.7 -- -- -- --
571.09 1.11 5.59 -- -- 5.93 -- -- 0.99 -- 50.41 10 10.2 --
2722.36 2.44 5.63 -- -- -- -- -- 0.824 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 503.32 radiation 10.0 10 < th dose dependent rect. 7 13
7 508.25 radiation 10.0 10 < th dose dependent sin 21 NA
35 519.39 radiation 10.0 10 < th dose independent rect. 12 8
41 520.68 radiation 10.0 10 < th dose independent rect. 8 12
42 520.70 radiation 10.0 10 < th dose independent rect. 10 10
53 522.06 radiation 10.0 90 < th dose dependent rect. 11 8
89 525.84 radiation 10.0 10 > th dose independent sin 19 NA
120 531.89 radiation 10.0 10 < th dose independent sin 19 NA
206 539.42 radiation 40.0 90 < th dose dependent rect. 15 5
208 539.53 humidity 80.0 30 < th dose independent rect. 10 6
233 542.42 radiation 10.0 10 > th dose independent rect. 10 21
250 543.89 radiation 30.0 270 < th dose independent rect. 15 3
254 544.32 radiation 10.0 10 > th dose independent rect. 10 8
281 544.79 radiation 40.0 270 < th dose independent rect. 14 5
298 545.80 radiation 10.0 270 > th dose independent rect. 9 5
305 546.16 humidity 80.0 90 < th dose independent rect. 22 18
362 549.13 humidity 50.0 10 > th dose independent rect. 16 4
371 549.81 wind 9.0 270 < th dose independent rect. 15 3
373 549.91 wind 1.0 270 > th dose independent rect. 15 3
375 549.96 temperature 10.0 270 > th dose independent rect. 15 3
377 549.96 atmosphere 1010.0 270 < th dose independent rect. 15 3
379 549.96 temperature 10.0 270 > th dose independent rect. 18 21
422 551.95 atmosphere 995.0 10 > th dose independent rect. 16 4
424 552.03 wind 9.0 270 < th dose independent rect. 18 21
435 552.45 precipitation 0.1 270 < th dose independent rect. 15 3
441 552.45 precipitation 0.1 270 < th dose dependent rect. 15 3
445 552.55 atmosphere 995.0 90 > th dose independent rect. 16 4
451 552.60 atmosphere 995.0 270 > th dose independent rect. 19 19
452 552.67 radiation 10.0 10 > th dose independent rect. 10 23
456 552.76 humidity 80.0 90 < th dose independent rect. 5 11
458 552.76 temperature 15.0 10 > th dose dependent rect. 10 6
463 553.01 radiation 20.0 10 < th dose dependent rect. 13 21
497 553.81 precipitation 0.1 270 < th dose independent rect. 18 21
498 553.81 precipitation 0.1 270 < th dose dependent rect. 18 21
499 553.83 wind 9.0 270 < th dose independent rect. 19 19
501 553.86 atmosphere 995.0 270 > th dose independent rect. 18 21
507 554.01 radiation 10.0 90 < th dose dependent rect. 17 2
514 554.07 precipitation 0.1 270 < th dose independent rect. 19 19
515 554.07 precipitation 0.1 270 < th dose dependent rect. 19 19
555 555.18 precipitation 0.1 10 < th dose independent rect. 16 4
556 555.18 precipitation 0.1 10 < th dose dependent rect. 16 4
558 555.25 atmosphere 995.0 270 > th dose independent rect. 14 5
572 555.54 atmosphere 995.0 10 > th dose dependent rect. 16 4
575 555.71 temperature 10.0 270 > th dose independent rect. 16 1
577 555.71 atmosphere 1010.0 270 < th dose independent rect. 16 1
580 555.71 temperature 10.0 270 > th dose independent rect. 17 23
582 555.76 temperature 10.0 10 > th dose independent rect. 16 4
584 555.76 atmosphere 1010.0 10 < th dose independent rect. 16 4
587 555.76 temperature 10.0 10 > th dose independent rect. 20 20
592 555.92 wind 1.0 10 > th dose independent rect. 16 4
596 556.05 wind 9.0 270 < th dose independent rect. 16 1
597 556.06 wind 1.0 270 > th dose independent rect. 16 1
599 556.09 wind 9.0 10 < th dose independent rect. 16 4
605 556.27 radiation 10.0 270 > th dose independent rect. 10 3
613 556.48 atmosphere 995.0 270 > th dose dependent rect. 15 3
622 556.51 wind 9.0 10 < th dose independent rect. 20 20
625 556.52 radiation 20.0 30 < th dose dependent rect. 15 23
640 556.69 radiation 20.0 30 < th dose dependent no NA NA
666 557.23 atmosphere 995.0 10 > th dose independent rect. 20 20
672 557.38 radiation 20.0 30 < th dose dependent rect. 9 23
683 557.54 precipitation 0.1 270 < th dose independent rect. 16 1
685 557.54 precipitation 0.1 270 < th dose dependent rect. 16 1
692 557.67 atmosphere 995.0 270 > th dose independent rect. 16 1
693 557.71 temperature 10.0 1440 > th dose independent rect. 17 4
696 557.71 radiation 30.0 1440 < th dose independent rect. 17 4
702 557.71 temperature 10.0 1440 > th dose independent rect. 21 20
720 557.91 precipitation 0.1 10 < th dose independent rect. 20 20
721 557.91 precipitation 0.1 10 < th dose dependent rect. 20 20
739 558.34 radiation 10.0 10 > th dose independent rect. 8 23
742 558.44 temperature 10.0 270 > th dose dependent rect. 8 6
748 558.65 wind 9.0 30 < th dose dependent rect. 16 4
758 558.74 radiation 20.0 30 < th dose dependent rect. 2 18
855 560.66 humidity 80.0 10 < th dose independent rect. 12 4
899 560.95 radiation 10.0 10 > th dose independent rect. 8 10
930 561.19 atmosphere 995.0 270 > th dose dependent rect. 14 5
931 561.20 radiation 10.0 10 > th dose independent rect. 12 19
939 561.35 temperature 10.0 270 > th dose dependent rect. 15 4
949 561.55 humidity 90.0 270 < th dose independent rect. 16 1
956 561.67 radiation 20.0 10 < th dose dependent rect. 7 23
961 561.76 temperature 10.0 270 > th dose dependent rect. 4 10