Os03g0435200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0435200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.58 | 0.459 | 7.65 | 0.315 | 1.07 | -0.399 | -0.16 | -2.42 | 0.439 | 20.1 | 22.5 | 2173 | -- | -- |
| 108.22 | 0.488 | 7.73 | -0.487 | 1.15 | -0.327 | 0.207 | -- | 0.266 | 20.6 | 22.5 | 2173 | -- | -- |
| 95.66 | 0.456 | 7.65 | 0.312 | 1.07 | -0.398 | -- | -2.4 | 0.437 | 20.2 | 22.48 | 2174 | -- | -- |
| 108.36 | 0.488 | 7.73 | -0.492 | 1.15 | -0.325 | -- | -- | 0.266 | 20.6 | 22.48 | 2174 | -- | -- |
| 157.88 | 0.585 | 7.62 | 0.272 | -- | -0.493 | -- | -2.47 | 0.402 | -- | 22.4 | 2256 | -- | -- |
| 114.74 | 0.502 | 7.7 | -0.372 | 1.09 | -- | 0.125 | -- | 0.372 | 20.3 | -- | -- | -- | -- |
| 114.79 | 0.502 | 7.7 | -0.375 | 1.09 | -- | -- | -- | 0.372 | 20.2 | -- | -- | -- | -- |
| 146.03 | 0.563 | 7.76 | -0.572 | -- | -0.851 | -- | -- | 0.0797 | -- | 25.98 | 607 | -- | -- |
| 114.41 | 0.501 | 7.71 | -- | 1.14 | -0.252 | -- | -- | 0.342 | 20.5 | 22.48 | 2174 | -- | -- |
| 180.75 | 0.628 | 7.67 | -0.383 | -- | -- | -- | -- | 0.36 | -- | -- | -- | -- | -- |
| 118.5 | 0.509 | 7.69 | -- | 1.09 | -- | -- | -- | 0.414 | 20.2 | -- | -- | -- | -- |
| 153.51 | 0.577 | 7.72 | -- | -- | -0.764 | -- | -- | 0.137 | -- | 25.22 | 586 | -- | -- |
| 184.61 | 0.634 | 7.67 | -- | -- | -- | -- | -- | 0.402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 58 | 96.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 88 | 97.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 119 | 97.82 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 139 | 98.06 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 194 | 98.63 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 217 | 98.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 218 | 98.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 231 | 98.80 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 232 | 98.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 249 | 98.98 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 258 | 99.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 277 | 99.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 279 | 99.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 297 | 99.21 | temperature | 25 | 1440 | < th | dose independent | sin | 14 | NA |
| 340 | 99.31 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 355 | 99.34 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 525 | 99.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 574 | 99.77 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 587 | 99.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 629 | 99.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 723 | 100.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 743 | 100.08 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 950 | 100.37 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 15 |