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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0434800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0352) R2 : 3.04e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00872 (0.0741) R2dN8 : 3.93e-05 R2N8 : 3.04e-05
σ : 0.662
deviance : 201.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.08 0.644 3.17 -0.0721 0.0639 -3.16 -0.798 -5.82 0.0203 12.1 8.9 31 -- --
189.27 0.641 3.15 -0.115 0.0517 -1.69 -0.691 -- 0.0236 12.8 8.998 31 -- --
190.2 0.642 3.18 -0.0739 0.0923 -3.09 -- -5.08 -0.00371 8.84 9 31 -- --
190.68 0.643 3.14 -0.193 0.127 -1.84 -- -- 0.00664 8.37 9 31 -- --
190.97 0.644 3.16 -0.108 -- -2.92 -- -4.34 0.0205 -- 9 31 -- --
196.18 0.657 3.15 -0.203 0.0867 -- -0.878 -- -0.0115 12.9 -- -- -- --
198.91 0.66 3.16 -0.237 0.131 -- -- -- -0.018 9.57 -- -- -- --
191.54 0.645 3.15 -0.131 -- -1.81 -- -- 0.0228 -- 8.988 31 -- --
191.07 0.644 3.14 -- 0.127 -1.84 -- -- 0.00664 7.96 9 31 -- --
199.92 0.661 3.16 -0.238 -- -- -- -- -0.0177 -- -- -- -- --
200.39 0.662 3.15 -- 0.131 -- -- -- 0.00841 9.71 -- -- -- --
191.97 0.645 3.15 -- -- -1.89 -- -- 0.0386 -- 8.995 31 -- --
201.42 0.662 3.15 -- -- -- -- -- 0.00872 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.71 radiation 40 14400 < th dose independent rect. 16 1
2 183.74 radiation 1 43200 > th dose dependent rect. 18 1
13 183.82 wind 1 14400 < th dose dependent rect. 2 1
14 183.91 radiation 40 14400 < th dose independent rect. 16 14
15 183.93 radiation 40 4320 < th dose dependent rect. 18 3
16 183.95 radiation 40 14400 < th dose independent rect. 16 5
18 184.04 radiation 40 43200 < th dose dependent rect. 18 11
23 184.14 humidity 50 43200 > th dose independent rect. 14 22
24 184.17 radiation 40 14400 < th dose independent rect. 16 11
27 184.19 wind 1 43200 > th dose independent rect. 16 1
29 184.23 wind 9 30 > th dose dependent sin 6 NA
31 184.24 radiation 40 43200 > th dose dependent rect. 15 1
49 184.26 radiation 20 14400 < th dose independent rect. 17 4
51 184.27 wind 1 43200 < th dose independent rect. 15 2
52 184.28 humidity 70 14400 < th dose independent rect. 21 1
62 184.32 humidity 50 43200 < th dose independent rect. 14 22
64 184.36 radiation 10 43200 < th dose dependent rect. 4 1
67 184.41 radiation 20 14400 < th dose independent rect. 17 10
70 184.43 wind 1 43200 < th dose dependent rect. 15 2
73 184.44 temperature 15 14400 > th dose independent rect. 9 2
84 184.49 radiation 20 14400 < th dose independent rect. 17 13
85 184.50 radiation 1 14400 > th dose independent rect. 9 2
87 184.51 radiation 10 43200 < th dose independent rect. 19 10
88 184.52 temperature 15 14400 < th dose independent rect. 24 1
108 184.60 humidity 60 43200 < th dose dependent rect. 17 19
113 184.62 humidity 70 14400 < th dose dependent rect. 21 1
122 184.63 temperature 15 14400 < th dose independent rect. 22 3
124 184.64 radiation 1 43200 > th dose independent rect. 4 1
128 184.64 temperature 15 14400 > th dose independent rect. 21 4
136 184.64 radiation 1 43200 > th dose dependent rect. 4 1
147 184.66 radiation 1 14400 < th dose independent rect. 9 2
149 184.66 radiation 1 43200 < th dose dependent rect. 9 2
156 184.70 humidity 50 43200 > th dose independent sin 15 NA
160 184.70 radiation 20 43200 < th dose independent rect. 19 12
161 184.70 humidity 60 43200 < th dose independent rect. 18 16
166 184.71 temperature 15 14400 < th dose independent rect. 21 5
172 184.73 radiation 20 43200 < th dose independent rect. 5 2
174 184.73 radiation 10 43200 < th dose independent rect. 24 5
188 184.76 radiation 20 43200 < th dose independent rect. 2 5
199 184.78 radiation 20 14400 < th dose independent rect. 17 1
201 184.78 humidity 80 43200 > th dose dependent rect. 23 2
204 184.79 humidity 50 43200 > th dose independent rect. 9 1
210 184.79 wind 9 30 > th dose dependent rect. 21 15
219 184.80 humidity 60 43200 > th dose independent rect. 18 16
232 184.83 wind 9 30 > th dose dependent rect. 11 1
237 184.83 radiation 40 43200 < th dose dependent rect. 18 8
241 184.85 humidity 50 43200 < th dose independent sin 14 NA
242 184.85 humidity 50 43200 < th dose independent rect. 9 2
247 184.86 temperature 20 43200 > th dose independent rect. 14 1
248 184.86 temperature 20 43200 < th dose independent rect. 14 1
258 184.86 temperature 20 43200 < th dose dependent rect. 14 1
260 184.87 temperature 15 14400 > th dose independent rect. 24 1
285 184.88 wind 9 30 > th dose dependent rect. 1 11
295 184.89 humidity 50 43200 < th dose independent rect. 14 6
303 184.90 temperature 15 14400 < th dose independent rect. 9 2
319 184.92 humidity 50 43200 < th dose independent rect. 14 14
424 185.07 radiation 20 43200 > th dose dependent rect. 16 2
483 185.10 humidity 50 43200 < th dose independent rect. 17 19
492 185.11 wind 9 43200 > th dose dependent rect. 11 1
507 185.12 humidity 70 14400 < th dose dependent rect. 20 11
510 185.13 wind 1 43200 < th dose independent rect. 6 13
513 185.13 humidity 70 14400 < th dose dependent rect. 19 13
562 185.20 temperature 15 14400 < th dose dependent rect. 4 1
578 185.22 temperature 15 43200 < th dose dependent rect. 23 1
584 185.23 humidity 50 43200 > th dose independent rect. 14 6
585 185.23 wind 1 43200 < th dose independent rect. 12 7
594 185.24 wind 1 43200 < th dose dependent rect. 12 6
596 185.25 temperature 15 43200 > th dose independent rect. 2 1
616 185.27 humidity 50 43200 > th dose independent rect. 14 14
625 185.28 humidity 50 43200 > th dose independent rect. 13 17
627 185.28 humidity 60 43200 < th dose dependent rect. 9 2
638 185.29 temperature 20 43200 < th dose dependent rect. 12 7
697 185.35 wind 1 43200 > th dose independent rect. 12 7
708 185.37 radiation 40 43200 > th dose independent rect. 15 1
745 185.39 temperature 15 14400 < th dose independent rect. 21 16
763 185.41 humidity 60 43200 < th dose dependent sin 9 NA
799 185.45 temperature 15 14400 > th dose independent rect. 6 6
804 185.45 humidity 50 43200 < th dose dependent rect. 14 4
818 185.46 radiation 30 43200 > th dose dependent rect. 7 1
886 185.49 humidity 60 43200 < th dose independent rect. 24 11
889 185.49 radiation 20 43200 > th dose independent rect. 16 15
890 185.49 temperature 20 43200 < th dose dependent rect. 18 1
907 185.51 temperature 15 14400 > th dose independent rect. 9 18
921 185.52 humidity 60 43200 < th dose dependent rect. 1 10
930 185.53 temperature 15 14400 < th dose independent rect. 5 7
933 185.53 humidity 60 43200 < th dose dependent rect. 3 8
956 185.55 wind 1 43200 < th dose dependent rect. 12 1
979 185.57 humidity 60 43200 < th dose dependent sin 4 NA