Os03g0434500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase (EC 1.11.1.7).
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Os03g0434500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase (EC 1.11.1.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.71 | 0.645 | 4.22 | 0.272 | 0.205 | -1.29 | -1.65 | 1.73 | -0.00477 | 9.1 | 21.8 | 1337 | -- | -- |
| 190.79 | 0.643 | 4.28 | -0.224 | 0.193 | -1.2 | -1.73 | -- | -0.132 | 8.99 | 21.29 | 1333 | -- | -- |
| 196.07 | 0.652 | 4.25 | -0.0016 | 0.357 | -1.15 | -- | 1.17 | -0.0679 | 11.9 | 21.5 | 1455 | -- | -- |
| 198.4 | 0.656 | 4.3 | -0.209 | 0.313 | -1.09 | -- | -- | -0.176 | 12.8 | 21.35 | 1455 | -- | -- |
| 199.36 | 0.658 | 4.22 | 0.194 | -- | -1.34 | -- | 1.84 | 0.00999 | -- | 21.01 | 1126 | -- | -- |
| 236.66 | 0.721 | 4.34 | -0.66 | 0.356 | -- | -1.25 | -- | -0.411 | 10.8 | -- | -- | -- | -- |
| 240.95 | 0.727 | 4.34 | -0.703 | 0.408 | -- | -- | -- | -0.409 | 12.8 | -- | -- | -- | -- |
| 202.66 | 0.663 | 4.29 | -0.29 | -- | -1.27 | -- | -- | -0.138 | -- | 20.49 | 1139 | -- | -- |
| 200.16 | 0.659 | 4.27 | -- | 0.328 | -1.12 | -- | -- | -0.106 | 12.5 | 20.85 | 1455 | -- | -- |
| 251.32 | 0.741 | 4.35 | -0.718 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 253.98 | 0.745 | 4.32 | -- | 0.419 | -- | -- | -- | -0.331 | 12.9 | -- | -- | -- | -- |
| 204.48 | 0.666 | 4.27 | -- | -- | -1.41 | -- | -- | -0.0853 | -- | 19.23 | 1126 | -- | -- |
| 264.93 | 0.76 | 4.33 | -- | -- | -- | -- | -- | -0.337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.25 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 2 | 180.26 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 19 | 181.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 20 | 181.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 21 | 181.18 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 13 |
| 28 | 181.20 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 70 | 182.17 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 72 | 182.31 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 233 | 184.23 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 241 | 184.58 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 249 | 184.70 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 307 | 184.85 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 308 | 184.87 | wind | 7 | 43200 | < th | dose independent | sin | 19 | NA |
| 311 | 184.91 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 314 | 184.95 | wind | 7 | 43200 | > th | dose independent | sin | 19 | NA |
| 326 | 185.00 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 327 | 185.01 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 329 | 185.03 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 331 | 185.04 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 418 | 185.34 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 529 | 185.38 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 18 |
| 534 | 185.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 544 | 185.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 559 | 185.40 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 691 | 185.54 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 692 | 185.55 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 18 |
| 716 | 185.61 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 18 |
| 771 | 185.84 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 790 | 185.86 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 804 | 185.91 | temperature | 30 | 14400 | > th | dose dependent | sin | 13 | NA |
| 806 | 185.92 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 817 | 185.96 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 21 |
| 857 | 186.12 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 876 | 186.20 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 877 | 186.20 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 882 | 186.21 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 12 |
| 892 | 186.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 898 | 186.26 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 945 | 186.42 | wind | 7 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 951 | 186.44 | wind | 7 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 952 | 186.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |