Os03g0432800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0432800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.35 | 0.597 | 5.27 | 0.5 | 0.473 | -1.19 | 0.31 | -0.312 | -0.268 | 9.45 | 22.29 | 1039 | -- | -- |
| 161.6 | 0.592 | 5.26 | 0.603 | 0.473 | -1.19 | 0.409 | -- | -0.244 | 9.36 | 22.2 | 1040 | -- | -- |
| 161.65 | 0.592 | 5.27 | 0.475 | 0.467 | -1.19 | -- | -0.423 | -0.278 | 9.57 | 22.3 | 1027 | -- | -- |
| 162.14 | 0.593 | 5.26 | 0.615 | 0.471 | -1.19 | -- | -- | -0.243 | 9.57 | 22.2 | 1040 | -- | -- |
| 172.33 | 0.611 | 5.27 | 0.533 | -- | -1.24 | -- | -0.3 | -0.219 | -- | 22.3 | 852 | -- | -- |
| 219.97 | 0.695 | 5.34 | 0.195 | 0.643 | -- | 0.316 | -- | -0.645 | 10.1 | -- | -- | -- | -- |
| 220.35 | 0.695 | 5.34 | 0.208 | 0.641 | -- | -- | -- | -0.644 | 10.2 | -- | -- | -- | -- |
| 172.87 | 0.612 | 5.27 | 0.608 | -- | -1.25 | -- | -- | -0.224 | -- | 22.24 | 831 | -- | -- |
| 171.31 | 0.61 | 5.28 | -- | 0.475 | -1.04 | -- | -- | -0.346 | 9.6 | 22.35 | 1001 | -- | -- |
| 245.3 | 0.732 | 5.36 | 0.199 | -- | -- | -- | -- | -0.646 | -- | -- | -- | -- | -- |
| 221.49 | 0.696 | 5.35 | -- | 0.64 | -- | -- | -- | -0.667 | 10.2 | -- | -- | -- | -- |
| 182.05 | 0.628 | 5.29 | -- | -- | -1.14 | -- | -- | -0.326 | -- | 22.25 | 801 | -- | -- |
| 246.35 | 0.733 | 5.37 | -- | -- | -- | -- | -- | -0.668 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.05 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 5 | 162.17 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 9 | 162.28 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 20 | 162.53 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 25 | 162.60 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 39 | 162.92 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 14 | 13 |
| 44 | 163.01 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 48 | 163.07 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 57 | 163.23 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 63 | 163.29 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 102 | 163.72 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 175 | 164.76 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 321 | 166.32 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 343 | 166.49 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 355 | 166.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 458 | 167.53 | temperature | 10.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 462 | 167.55 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 562 | 168.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 564 | 168.33 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 597 | 168.52 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 639 | 168.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 761 | 169.30 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 785 | 169.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 786 | 169.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 898 | 169.94 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 22 |