Os03g0431100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : XYPPX repeat containing protein.
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Os03g0431100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : XYPPX repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.54 | 0.337 | 12.7 | 0.0741 | 1.31 | -0.702 | 0.188 | 0.573 | -0.0705 | 2.37 | 21.26 | 55 | -- | -- |
| 52.37 | 0.337 | 12.7 | 0.0826 | 1.31 | -0.7 | -0.0956 | -- | -0.0713 | 2.42 | 21.46 | 44 | -- | -- |
| 51.61 | 0.335 | 12.7 | 0.0771 | 1.3 | -0.713 | -- | 0.52 | -0.0689 | 2.37 | 21.26 | 58 | -- | -- |
| 52.42 | 0.337 | 12.7 | 0.0793 | 1.31 | -0.697 | -- | -- | -0.0699 | 2.39 | 21.43 | 45 | -- | -- |
| 65.93 | 0.378 | 12.7 | -0.0294 | -- | -1.36 | -- | 0.381 | -0.0122 | -- | 3.67 | 275 | -- | -- |
| 67.75 | 0.386 | 12.7 | 0.00222 | 1.74 | -- | -0.0428 | -- | -0.102 | 1.88 | -- | -- | -- | -- |
| 67.76 | 0.385 | 12.7 | 0.00354 | 1.74 | -- | -- | -- | -0.102 | 1.89 | -- | -- | -- | -- |
| 64.41 | 0.374 | 12.7 | 0.0755 | -- | -1.48 | -- | -- | -0.0648 | -- | 4.879 | 277 | -- | -- |
| 52.58 | 0.338 | 12.7 | -- | 1.31 | -0.689 | -- | -- | -0.0802 | 2.39 | 21.46 | 44 | -- | -- |
| 250.3 | 0.739 | 12.7 | 0.0751 | -- | -- | -- | -- | -0.0617 | -- | -- | -- | -- | -- |
| 67.76 | 0.385 | 12.7 | -- | 1.74 | -- | -- | -- | -0.102 | 1.89 | -- | -- | -- | -- |
| 64.31 | 0.373 | 12.7 | -- | -- | -1.49 | -- | -- | -0.0703 | -- | 4.88 | 277 | -- | -- |
| 250.45 | 0.739 | 12.7 | -- | -- | -- | -- | -- | -0.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.76 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 2 | 45.95 | humidity | 90 | 90 | < th | dose dependent | rect. | 7 | 8 |
| 3 | 46.15 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 6 | 46.46 | humidity | 90 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 14 | 46.81 | humidity | 90 | 90 | < th | dose dependent | sin | 3 | NA |
| 28 | 47.38 | humidity | 90 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 32 | 47.45 | humidity | 90 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 37 | 47.52 | humidity | 50 | 90 | > th | dose dependent | sin | 3 | NA |
| 47 | 47.61 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 81 | 48.01 | humidity | 50 | 10 | > th | dose dependent | sin | 1 | NA |
| 201 | 49.23 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 232 | 49.48 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 15 |
| 240 | 49.52 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 281 | 49.79 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 289 | 49.86 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 22 |
| 292 | 49.88 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 7 |
| 295 | 49.90 | radiation | 20 | 10 | < th | dose independent | rect. | 5 | 17 |
| 321 | 50.10 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 19 |
| 353 | 50.26 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 364 | 50.32 | humidity | 80 | 90 | < th | dose independent | rect. | 7 | 8 |
| 389 | 50.46 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 20 |
| 394 | 50.48 | radiation | 40 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 449 | 50.75 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 19 |
| 483 | 50.91 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 12 |
| 537 | 51.12 | radiation | 10 | 270 | < th | dose dependent | sin | 2 | NA |
| 548 | 51.14 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 561 | 51.20 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 588 | 51.26 | humidity | 50 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 591 | 51.28 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 8 |
| 601 | 51.29 | humidity | 50 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 609 | 51.31 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 630 | 51.38 | radiation | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 650 | 51.44 | humidity | 70 | 10 | > th | dose independent | sin | 2 | NA |
| 685 | 51.50 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 16 |
| 731 | 51.61 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 10 |
| 777 | 51.74 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 796 | 51.80 | humidity | 70 | 90 | < th | dose independent | sin | 3 | NA |
| 812 | 51.83 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 814 | 51.83 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 855 | 51.92 | radiation | 20 | 30 | > th | dose independent | rect. | 9 | 23 |
| 888 | 52.01 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 7 |
| 909 | 52.03 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 21 |
| 932 | 52.07 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 8 |
| 935 | 52.07 | radiation | 20 | 10 | > th | dose independent | rect. | 7 | 9 |
| 962 | 52.07 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 979 | 52.09 | radiation | 20 | 10 | < th | dose independent | rect. | 16 | 18 |
| 981 | 52.10 | radiation | 20 | 10 | > th | dose independent | no | NA | NA |