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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0428700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-expansin OsEXPA19.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0393) R2 : 0.134
β1 : -0.0663 (0.146) R2dD : 0.000228 R2D : -0.00438
β2 : -- (--) R2dC : -- R2C : --
β3 : 11.1 (1.41) R2dE : 0.734 R2E : -0.659
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -67.7 (8.21) R2dD*E : 0.795 R2D*E : -0.599
γ1 : 0.00234 (0.0837) R2dN8 : 1.22e-06 R2N8 : -0.00172
σ : 0.733
deviance : 247.44
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1004
memory length : 154
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.02
open length of G : 1.23

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
248.25 0.74 2.92 -0.0153 0.0402 9.89 0.0449 -60.3 0.00244 10.8 1004 139 6.2 1.51
280.21 0.786 2.89 0.188 0.0399 1.09 -0.32 -- -0.0131 7.55 1010 40 7.78 1.51
247.59 0.733 2.93 -0.0205 0.054 10.4 -- -64 -0.0167 9.87 1004 152 6.08 1.28
280.44 0.785 2.89 0.182 0.0486 1.09 -- -- -0.0119 10.2 1010 40 7.78 1.51
247.44 0.733 2.92 -0.0663 -- 11.1 -- -67.7 0.00234 -- 1004 154 6.02 1.23
283.86 0.79 2.89 0.183 0.102 -- -0.292 -- -0.033 8.02 -- -- -- --
284.09 0.789 2.89 0.175 0.102 -- -- -- -0.0323 8.78 -- -- -- --
280.58 0.784 2.89 0.181 -- 1.13 -- -- -0.0114 -- 1010 40 7.78 1.51
281.31 0.785 2.9 -- 0.0483 1.08 -- -- -0.0323 9.9 1010 40 7.78 1.51
284.68 0.788 2.9 0.176 -- -- -- -- -0.0315 -- -- -- -- --
284.9 0.79 2.9 -- 0.103 -- -- -- -0.0518 8.66 -- -- -- --
281.44 0.784 2.9 -- -- 1.12 -- -- -0.0316 -- 1010 40 7.78 1.51
285.49 0.789 2.9 -- -- -- -- -- -0.051 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 254.56 atmosphere 1005.0 90 < th dose dependent rect. 7 1
14 257.97 wind 1.0 90 < th dose independent rect. 13 1
16 259.31 atmosphere 1000.0 10 < th dose dependent rect. 14 1
22 259.35 atmosphere 1000.0 90 < th dose independent rect. 13 1
24 259.39 wind 1.0 10 < th dose independent rect. 13 1
26 259.39 wind 1.0 10 < th dose dependent rect. 13 1
52 262.38 radiation 40.0 10 > th dose dependent rect. 14 1
102 267.45 temperature 30.0 10 > th dose independent rect. 14 1
104 267.94 radiation 40.0 10 > th dose independent rect. 14 1
143 268.26 wind 1.0 30 < th dose independent rect. 7 1
174 270.08 wind 3.0 30 < th dose dependent rect. 7 1
175 270.25 atmosphere 1005.0 10 < th dose independent rect. 8 1
181 270.39 atmosphere 1000.0 10 < th dose dependent rect. 13 7
185 270.49 wind 5.0 14400 > th dose dependent rect. 20 1
203 270.73 wind 5.0 14400 > th dose independent rect. 20 1
220 271.08 wind 5.0 14400 < th dose independent rect. 20 1
233 271.35 wind 9.0 14400 < th dose independent rect. 20 15
236 271.37 atmosphere 1005.0 270 > th dose dependent rect. 18 1
239 271.37 precipitation 0.1 14400 > th dose dependent rect. 17 6
243 271.41 wind 9.0 14400 > th dose dependent rect. 20 15
245 271.42 wind 7.0 14400 > th dose dependent rect. 20 5
248 271.44 wind 9.0 14400 > th dose independent rect. 20 15
249 271.45 wind 9.0 14400 > th dose independent rect. 20 6
278 271.61 atmosphere 1000.0 90 < th dose dependent rect. 1 13
280 271.62 wind 9.0 14400 < th dose independent rect. 20 7
305 271.71 atmosphere 1000.0 90 < th dose dependent rect. 3 11
309 271.74 humidity 80.0 270 > th dose dependent rect. 7 1
312 271.76 humidity 80.0 10 > th dose independent rect. 8 1
330 271.78 atmosphere 1000.0 90 < th dose dependent rect. 5 9
346 271.85 precipitation 0.1 14400 > th dose independent rect. 17 5
347 271.85 precipitation 0.1 14400 < th dose independent rect. 17 5
349 271.85 precipitation 0.1 14400 < th dose dependent rect. 17 5
355 271.90 radiation 10.0 43200 > th dose independent rect. 7 3
363 271.95 precipitation 0.1 14400 < th dose independent rect. 17 1
364 271.95 precipitation 0.1 14400 < th dose dependent rect. 17 1
365 271.95 precipitation 0.1 14400 > th dose dependent rect. 14 4
367 271.96 precipitation 0.1 14400 > th dose independent rect. 17 1
382 272.07 precipitation 0.1 14400 > th dose dependent rect. 6 12
390 272.09 precipitation 0.1 14400 > th dose dependent rect. 8 10
409 272.18 precipitation 0.1 14400 > th dose dependent rect. 8 15
410 272.18 precipitation 0.1 14400 > th dose dependent rect. 6 17
423 272.22 radiation 20.0 43200 < th dose dependent rect. 9 1
445 272.26 radiation 10.0 720 < th dose dependent rect. 23 9
459 272.28 wind 5.0 14400 > th dose dependent rect. 17 19
468 272.31 atmosphere 1005.0 90 > th dose dependent rect. 18 4
473 272.32 precipitation 0.1 14400 > th dose independent rect. 15 8
474 272.32 precipitation 0.1 14400 < th dose independent rect. 15 8
479 272.32 precipitation 0.1 14400 < th dose dependent rect. 15 8
489 272.33 precipitation 0.1 14400 > th dose dependent rect. 20 22
538 272.44 wind 9.0 14400 > th dose dependent rect. 17 19
558 272.48 atmosphere 1000.0 270 < th dose independent rect. 10 4
563 272.49 wind 5.0 14400 < th dose independent rect. 6 4
566 272.49 wind 1.0 43200 < th dose dependent rect. 8 1
567 272.49 wind 1.0 30 < th dose dependent rect. 10 4
586 272.53 precipitation 0.1 14400 > th dose dependent sin 18 NA
597 272.55 humidity 90.0 14400 > th dose independent rect. 21 1
599 272.56 wind 5.0 14400 > th dose independent rect. 6 4
633 272.64 radiation 10.0 10 < th dose dependent rect. 7 4
645 272.66 radiation 10.0 43200 < th dose independent rect. 8 2
662 272.70 humidity 80.0 10 > th dose dependent rect. 7 3
673 272.73 humidity 80.0 90 > th dose dependent rect. 7 4
688 272.78 radiation 20.0 43200 > th dose independent rect. 11 1
706 272.80 wind 5.0 14400 > th dose independent rect. 17 19
708 272.81 atmosphere 1000.0 30 < th dose independent rect. 13 7
710 272.82 temperature 20.0 14400 > th dose independent rect. 19 1
713 272.82 precipitation 0.1 14400 > th dose independent rect. 8 15
740 272.84 precipitation 0.1 14400 > th dose independent rect. 6 17
741 272.84 wind 5.0 14400 < th dose independent rect. 17 19
742 272.85 wind 1.0 43200 < th dose independent rect. 8 1
749 272.86 precipitation 0.1 14400 < th dose independent rect. 8 14
757 272.86 precipitation 0.1 14400 < th dose dependent rect. 8 14
761 272.87 precipitation 0.1 14400 < th dose independent rect. 6 17
768 272.87 precipitation 0.1 14400 < th dose dependent rect. 6 17
788 272.90 humidity 90.0 270 > th dose independent rect. 7 1
793 272.91 atmosphere 1000.0 14400 < th dose independent rect. 12 1
797 272.91 radiation 40.0 10 > th dose dependent sin 13 NA
800 272.92 atmosphere 1000.0 14400 > th dose independent rect. 12 1
842 272.95 temperature 20.0 14400 < th dose independent rect. 21 1
861 272.97 precipitation 0.1 14400 > th dose independent rect. 8 10
864 272.97 humidity 80.0 10 > th dose dependent rect. 8 1
872 272.99 precipitation 0.1 14400 < th dose independent rect. 8 10
875 272.99 precipitation 0.1 14400 < th dose dependent rect. 8 10
938 273.09 radiation 20.0 43200 > th dose independent rect. 9 3
939 273.09 precipitation 0.1 14400 > th dose independent rect. 10 8
947 273.10 temperature 20.0 14400 > th dose independent rect. 21 1
986 273.13 wind 9.0 43200 > th dose dependent rect. 13 8
995 273.14 radiation 40.0 43200 > th dose dependent rect. 10 2