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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0427300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutelin type-A III precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0318) R2 : 0.156
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.68 (0.403) R2dE : 0.155 R2E : 0.153
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0728 (0.067) R2dN8 : 0.00283 R2N8 : 0.000887
σ : 0.597
deviance : 164.57
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.9823
memory length : 8
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 24
open length of G : 3.29

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.45 0.595 2.94 0.188 0.191 4.06 0.565 2.67 -0.0547 8.83 1.018 11 24 3.03
161.39 0.592 2.94 0.199 0.189 4.07 0.53 -- -0.0565 8.54 1.016 11 24 3.03
161.49 0.592 2.94 0.207 0.192 4.02 -- 2.35 -0.054 8.39 1.018 11 24 3.02
161.67 0.592 2.94 0.196 0.19 3.77 -- -- -0.0527 8.31 0.9865 9 24 3.25
163.47 0.595 2.94 0.209 -- 4.01 -- 2.32 -0.0521 -- 0.9937 12 24 3.06
190.07 0.646 2.93 0.249 0.221 -- 0.343 -- -0.026 6.28 -- -- -- --
190.33 0.646 2.93 0.253 0.224 -- -- -- -0.0276 5.9 -- -- -- --
163.69 0.596 2.94 0.198 -- 3.72 -- -- -0.0476 -- 0.9904 9 24 3.27
162.53 0.594 2.94 -- 0.196 3.72 -- -- -0.0692 8.26 0.972 8 24 3.2
192.92 0.649 2.94 0.259 -- -- -- -- -0.0224 -- -- -- -- --
192.01 0.648 2.94 -- 0.228 -- -- -- -0.0557 5.85 -- -- -- --
164.57 0.597 2.95 -- -- 3.68 -- -- -0.0728 -- 0.9823 8 24 3.29
194.7 0.651 2.94 -- -- -- -- -- -0.0512 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.28 wind 1.0 10 < th dose dependent rect. 24 3
5 166.42 wind 1.0 10 < th dose dependent rect. 22 5
7 166.71 wind 1.0 10 < th dose dependent rect. 17 10
16 168.30 wind 1.0 10 < th dose dependent rect. 11 16
22 169.99 wind 1.0 10 < th dose dependent rect. 8 19
23 170.00 wind 1.0 10 < th dose independent rect. 22 5
25 170.05 wind 1.0 10 < th dose independent rect. 24 3
32 170.73 wind 1.0 10 < th dose independent rect. 17 10
73 173.21 wind 1.0 10 < th dose independent rect. 11 16
75 173.22 humidity 90.0 90 > th dose independent rect. 9 1
76 173.22 humidity 90.0 90 > th dose dependent rect. 9 1
83 173.92 wind 1.0 10 < th dose dependent sin 16 NA
97 174.52 wind 1.0 10 < th dose independent rect. 8 19
116 175.23 wind 1.0 10 < th dose independent rect. 6 21
117 175.38 precipitation 0.1 1440 > th dose independent rect. 2 1
118 175.38 precipitation 0.1 1440 > th dose dependent rect. 2 1
128 176.21 wind 1.0 1440 < th dose dependent rect. 21 3
139 176.51 wind 1.0 1440 < th dose dependent rect. 22 1
145 176.94 wind 1.0 14400 < th dose dependent rect. 21 2
148 177.06 precipitation 0.1 1440 > th dose independent rect. 8 1
149 177.06 precipitation 0.1 1440 > th dose dependent rect. 8 1
156 177.20 wind 1.0 14400 < th dose independent rect. 21 2
169 177.44 wind 5.0 10 > th dose independent rect. 24 8
170 177.45 humidity 90.0 1440 > th dose independent rect. 10 1
172 177.45 temperature 30.0 270 < th dose dependent rect. 20 16
177 177.54 humidity 90.0 1440 > th dose dependent rect. 10 1
182 177.66 wind 1.0 10 < th dose independent sin 16 NA
183 177.66 wind 1.0 14400 > th dose independent rect. 21 2
184 177.67 wind 7.0 1440 > th dose independent rect. 2 3
193 177.78 wind 7.0 1440 > th dose dependent rect. 2 3
201 177.88 temperature 20.0 270 > th dose dependent rect. 1 1
206 177.90 radiation 1.0 4320 < th dose independent rect. 2 5
209 177.92 radiation 1.0 4320 < th dose independent rect. 22 9
214 177.94 radiation 1.0 4320 < th dose independent rect. 5 2
219 177.96 radiation 1.0 4320 > th dose independent rect. 4 3
230 178.00 wind 5.0 30 > th dose dependent rect. 24 8
235 178.12 temperature 20.0 30 > th dose dependent rect. 1 5
242 178.24 radiation 1.0 4320 < th dose dependent rect. 21 9
245 178.26 radiation 1.0 4320 < th dose dependent rect. 5 1
249 178.31 radiation 1.0 4320 < th dose dependent rect. 2 4
261 178.41 temperature 30.0 90 < th dose dependent rect. 6 21
267 178.42 wind 7.0 1440 > th dose dependent rect. 2 1
279 178.46 humidity 70.0 14400 < th dose dependent rect. 21 11
286 178.52 humidity 70.0 14400 < th dose dependent rect. 6 2
300 178.55 wind 1.0 1440 < th dose independent rect. 22 1
307 178.58 wind 1.0 720 < th dose independent rect. 15 11
309 178.59 wind 1.0 720 < th dose independent rect. 20 6
313 178.62 humidity 90.0 14400 > th dose dependent rect. 5 1
317 178.66 wind 1.0 14400 > th dose independent rect. 21 5
323 178.67 wind 1.0 720 < th dose dependent rect. 15 10
324 178.68 precipitation 0.1 43200 > th dose independent rect. 17 1
326 178.69 precipitation 0.1 43200 < th dose independent rect. 17 1
327 178.69 precipitation 0.1 43200 < th dose dependent rect. 17 1
352 178.81 wind 1.0 14400 < th dose independent rect. 21 5
370 178.90 precipitation 0.1 1440 < th dose independent rect. 9 1
371 178.90 precipitation 0.1 1440 < th dose dependent rect. 9 1
373 178.94 precipitation 0.1 43200 > th dose dependent rect. 17 1
378 178.96 wind 1.0 14400 < th dose dependent rect. 19 7
383 178.99 wind 1.0 1440 < th dose independent rect. 21 3
391 179.04 humidity 60.0 14400 > th dose independent rect. 4 5
397 179.09 humidity 70.0 14400 < th dose independent rect. 6 2
411 179.12 humidity 60.0 14400 > th dose independent rect. 20 13
416 179.14 humidity 60.0 14400 > th dose independent rect. 1 8
425 179.17 temperature 30.0 270 < th dose dependent rect. 4 22
428 179.19 radiation 1.0 14400 < th dose independent rect. 15 2
430 179.20 wind 1.0 1440 > th dose independent rect. 21 3
433 179.21 wind 1.0 10 > th dose independent sin 16 NA
440 179.22 radiation 1.0 14400 > th dose independent rect. 15 2
443 179.23 wind 1.0 1440 > th dose independent rect. 11 1
447 179.26 humidity 50.0 14400 > th dose independent rect. 11 1
451 179.31 humidity 90.0 10 > th dose dependent rect. 20 7
460 179.36 humidity 60.0 14400 < th dose independent rect. 20 13
501 179.45 humidity 50.0 14400 > th dose independent rect. 4 8
514 179.49 humidity 50.0 14400 > th dose independent rect. 1 11
523 179.50 temperature 30.0 90 < th dose dependent rect. 23 13
524 179.51 wind 1.0 1440 > th dose independent rect. 22 1
525 179.51 humidity 50.0 14400 < th dose independent rect. 11 1
526 179.51 humidity 50.0 14400 > th dose independent rect. 21 15
529 179.51 humidity 50.0 14400 < th dose dependent rect. 11 1
551 179.54 wind 1.0 1440 < th dose dependent rect. 11 1
555 179.55 wind 1.0 14400 < th dose independent rect. 10 3
556 179.56 temperature 25.0 720 < th dose independent rect. 14 19
561 179.59 wind 3.0 10 < th dose independent rect. 3 8
569 179.61 temperature 10.0 30 > th dose dependent rect. 3 22
571 179.62 temperature 25.0 720 > th dose independent rect. 18 16
577 179.65 temperature 25.0 720 < th dose independent sin 13 NA
578 179.65 wind 1.0 14400 > th dose independent rect. 10 3
590 179.70 precipitation 0.1 14400 > th dose independent rect. 22 1
591 179.70 precipitation 0.1 14400 < th dose independent rect. 22 1
592 179.70 precipitation 0.1 14400 > th dose dependent rect. 22 1
593 179.70 precipitation 0.1 14400 < th dose dependent rect. 22 1
595 179.71 temperature 25.0 720 < th dose independent rect. 5 22
596 179.71 radiation 1.0 4320 < th dose dependent sin 8 NA
629 179.78 temperature 25.0 720 > th dose independent rect. 18 20
631 179.78 humidity 50.0 14400 < th dose dependent rect. 14 2
652 179.83 wind 1.0 1440 < th dose independent rect. 11 1
666 179.84 radiation 1.0 43200 < th dose independent rect. 18 9
670 179.85 radiation 1.0 43200 < th dose independent rect. 18 1
674 179.85 radiation 1.0 43200 < th dose independent rect. 18 7
676 179.85 radiation 40.0 4320 < th dose dependent rect. 2 4
702 179.88 temperature 25.0 720 < th dose independent rect. 19 7
714 179.91 radiation 1.0 4320 > th dose independent sin 9 NA
715 179.91 temperature 25.0 720 > th dose independent rect. 18 7
719 179.91 radiation 1.0 43200 < th dose dependent rect. 18 11
726 179.92 wind 1.0 14400 < th dose dependent rect. 1 1
733 179.93 radiation 1.0 43200 < th dose dependent rect. 18 8
747 179.96 radiation 1.0 43200 < th dose dependent rect. 18 1
757 179.97 radiation 1.0 43200 > th dose independent rect. 18 1
771 179.97 temperature 30.0 10 < th dose dependent rect. 11 16
777 179.98 radiation 40.0 4320 < th dose dependent rect. 22 8
849 180.04 radiation 1.0 4320 < th dose independent sin 9 NA
911 180.08 temperature 25.0 720 < th dose independent rect. 18 15
923 180.09 temperature 30.0 43200 < th dose independent rect. 15 1