Os03g0426900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Heat shock protein 101.
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Os03g0426900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Heat shock protein 101.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.05 | 0.345 | 12.5 | 0.257 | 0.308 | -0.932 | -0.854 | 0.597 | -0.115 | 23.2 | 22.02 | 10 | -- | -- |
| 54.37 | 0.343 | 12.5 | 0.266 | 0.304 | -0.916 | -0.251 | -- | -0.112 | 22.7 | 21.96 | 9 | -- | -- |
| 54.78 | 0.345 | 12.5 | 0.327 | 0.285 | -0.906 | -- | 0.0151 | -0.111 | 22.9 | 22.02 | 9 | -- | -- |
| 54.6 | 0.344 | 12.5 | 0.273 | 0.295 | -0.902 | -- | -- | -0.111 | 22.4 | 21.95 | 9 | -- | -- |
| 56.25 | 0.349 | 12.5 | 0.267 | -- | -0.79 | -- | -0.0406 | -0.149 | -- | 29.4 | 70 | -- | -- |
| 68.33 | 0.388 | 12.5 | 0.286 | 0.645 | -- | 0.476 | -- | -0.102 | 12.7 | -- | -- | -- | -- |
| 69.29 | 0.39 | 12.5 | 0.304 | 0.644 | -- | -- | -- | -0.0995 | 12.7 | -- | -- | -- | -- |
| 56.27 | 0.349 | 12.5 | 0.272 | -- | -0.784 | -- | -- | -0.147 | -- | 29.53 | 70 | -- | -- |
| 56.57 | 0.35 | 12.5 | -- | 0.306 | -0.915 | -- | -- | -0.142 | 22.5 | 22.17 | 9 | -- | -- |
| 95.22 | 0.456 | 12.5 | 0.281 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 71.72 | 0.396 | 12.5 | -- | 0.639 | -- | -- | -- | -0.133 | 12.7 | -- | -- | -- | -- |
| 58.18 | 0.355 | 12.5 | -- | -- | -0.785 | -- | -- | -0.179 | -- | 29.36 | 79 | -- | -- |
| 97.3 | 0.46 | 12.5 | -- | -- | -- | -- | -- | -0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.08 | radiation | 30 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 24 | 51.39 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 15 |
| 32 | 51.59 | radiation | 20 | 90 | < th | dose dependent | sin | 3 | NA |
| 52 | 52.04 | radiation | 20 | 10 | < th | dose dependent | sin | 2 | NA |
| 71 | 52.34 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 18 |
| 79 | 52.47 | radiation | 40 | 270 | < th | dose independent | rect. | 24 | 16 |
| 90 | 52.57 | radiation | 20 | 270 | < th | dose dependent | sin | 8 | NA |
| 96 | 52.65 | humidity | 60 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 110 | 52.88 | radiation | 1 | 90 | > th | dose dependent | sin | 6 | NA |
| 117 | 52.92 | humidity | 60 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 122 | 52.97 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 20 |
| 163 | 53.27 | humidity | 60 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 190 | 53.48 | radiation | 1 | 270 | > th | dose dependent | sin | 9 | NA |
| 207 | 53.58 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 9 |
| 215 | 53.65 | humidity | 60 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 265 | 53.89 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 270 | 53.92 | humidity | 60 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 291 | 54.03 | humidity | 60 | 10 | > th | dose dependent | sin | 4 | NA |
| 295 | 54.04 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 299 | 54.08 | radiation | 10 | 270 | > th | dose independent | sin | 8 | NA |
| 320 | 54.16 | radiation | 10 | 90 | > th | dose independent | sin | 3 | NA |
| 325 | 54.17 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 338 | 54.21 | radiation | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 343 | 54.22 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 387 | 54.36 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 407 | 54.43 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 435 | 54.52 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 515 | 54.78 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 519 | 54.79 | radiation | 10 | 90 | < th | dose independent | sin | 2 | NA |
| 523 | 54.79 | radiation | 1 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 536 | 54.81 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 548 | 54.81 | radiation | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 570 | 54.87 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 18 |
| 574 | 54.87 | radiation | 20 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 579 | 54.89 | radiation | 10 | 10 | < th | dose independent | rect. | 2 | 14 |
| 592 | 54.90 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 599 | 54.92 | radiation | 10 | 10 | > th | dose independent | sin | 3 | NA |
| 675 | 55.06 | radiation | 20 | 90 | < th | dose independent | rect. | 24 | 23 |
| 693 | 55.10 | radiation | 10 | 10 | < th | dose independent | sin | 2 | NA |
| 755 | 55.24 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 5 |
| 787 | 55.27 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 845 | 55.39 | radiation | 10 | 10 | < th | dose independent | rect. | 24 | 23 |
| 867 | 55.43 | radiation | 10 | 270 | < th | dose independent | sin | 8 | NA |
| 910 | 55.49 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 919 | 55.52 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 22 |
| 998 | 55.61 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 1000 | 55.62 | radiation | 10 | 10 | < th | dose independent | rect. | 2 | 17 |