Os03g0426300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os03g0426300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236 | 0.722 | 3.06 | -0.405 | 0.238 | 4.94 | 0.097 | -26.2 | -0.228 | 0.674 | 1004 | 245 | 12.4 | 1.72 |
| 270.18 | 0.766 | 3.02 | -0.245 | 0.207 | 1.45 | 0.527 | -- | -0.233 | 1.57 | 1008 | 146 | 13.6 | 0.634 |
| 235.88 | 0.715 | 3.05 | -0.41 | 0.249 | 5.01 | -- | -26.8 | -0.221 | 0.506 | 1004 | 245 | 12.5 | 1.63 |
| 271.1 | 0.767 | 3.03 | -0.242 | 0.216 | 1.3 | -- | -- | -0.255 | 0.0991 | 1008 | 155 | 13.3 | 1.22 |
| 238.55 | 0.719 | 3.06 | -0.367 | -- | 5.23 | -- | -28.5 | -0.25 | -- | 1004 | 165 | 12.6 | 1.91 |
| 276.49 | 0.78 | 3.04 | -0.233 | 0.153 | -- | 0.4 | -- | -0.296 | 0.083 | -- | -- | -- | -- |
| 276.82 | 0.779 | 3.05 | -0.246 | 0.173 | -- | -- | -- | -0.296 | 22.1 | -- | -- | -- | -- |
| 273.46 | 0.77 | 3.04 | -0.224 | -- | 1.18 | -- | -- | -0.28 | -- | 1007 | 105 | 13.9 | 0.683 |
| 272.81 | 0.769 | 3.04 | -- | 0.206 | 1.26 | -- | -- | -0.245 | 23.8 | 1008 | 146 | 13.3 | 1.28 |
| 278.63 | 0.78 | 3.04 | -0.244 | -- | -- | -- | -- | -0.295 | -- | -- | -- | -- | -- |
| 278.42 | 0.781 | 3.04 | -- | 0.172 | -- | -- | -- | -0.268 | 22 | -- | -- | -- | -- |
| 275.17 | 0.773 | 3.03 | -- | -- | 1.21 | -- | -- | -0.269 | -- | 1007 | 104 | 13.9 | 0.651 |
| 280.2 | 0.781 | 3.03 | -- | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 237.51 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 12 | 2 |
| 2 | 238.28 | humidity | 60 | 10 | < th | dose independent | rect. | 13 | 3 |
| 4 | 238.38 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 6 | 238.79 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 13 | 4 |
| 26 | 242.70 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 13 | 10 |
| 54 | 243.60 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 12 | 1 |
| 73 | 244.06 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 120 | 245.38 | wind | 3 | 30 | < th | dose independent | rect. | 13 | 4 |
| 153 | 248.21 | wind | 5 | 10 | < th | dose dependent | rect. | 13 | 4 |
| 157 | 248.76 | humidity | 60 | 10 | > th | dose independent | sin | 14 | NA |
| 180 | 249.82 | humidity | 60 | 10 | < th | dose independent | sin | 14 | NA |
| 181 | 249.83 | wind | 1 | 90 | < th | dose independent | rect. | 15 | 6 |
| 183 | 249.96 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 12 | 4 |
| 188 | 250.24 | humidity | 70 | 10 | < th | dose dependent | rect. | 13 | 3 |
| 223 | 251.49 | wind | 1 | 90 | < th | dose independent | rect. | 12 | 9 |
| 225 | 251.54 | humidity | 70 | 10 | < th | dose dependent | rect. | 13 | 20 |
| 259 | 252.18 | atmosphere | 1005 | 30 | < th | dose dependent | rect. | 13 | 15 |
| 269 | 252.46 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 19 | 16 |
| 300 | 252.99 | radiation | 30 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 303 | 253.06 | atmosphere | 1005 | 30 | < th | dose dependent | rect. | 13 | 13 |
| 336 | 253.74 | humidity | 70 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 360 | 253.88 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 12 | 22 |
| 366 | 253.97 | humidity | 70 | 10 | < th | dose dependent | sin | 13 | NA |
| 422 | 254.45 | wind | 3 | 270 | < th | dose independent | rect. | 13 | 1 |
| 424 | 254.46 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 426 | 254.47 | radiation | 20 | 30 | < th | dose independent | sin | 14 | NA |
| 428 | 254.49 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 445 | 254.49 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 482 | 254.60 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 19 | 2 |
| 542 | 254.77 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 19 | 3 |
| 591 | 255.01 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 19 | 3 |
| 694 | 255.34 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 21 | 1 |
| 717 | 255.34 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 734 | 255.38 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 19 | 8 |
| 748 | 255.44 | atmosphere | 1005 | 30 | < th | dose dependent | sin | 18 | NA |
| 759 | 255.50 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 2 |
| 783 | 255.58 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 899 | 255.94 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 903 | 255.97 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 940 | 256.18 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 948 | 256.25 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 958 | 256.30 | atmosphere | 1000 | 30 | > th | dose independent | sin | 11 | NA |
| 969 | 256.35 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 986 | 256.42 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 5 | 8 |