FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0425900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0206) R2 : 0.000174
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0122 (0.0433) R2dN8 : 0.000225 R2N8 : 0.000174
σ : 0.387
deviance : 68.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.01 0.382 2.91 0.151 0.162 0.348 -0.145 -0.244 0.0377 7.52 4.8 3265 -- --
66.02 0.378 2.91 0.155 0.162 0.372 -0.122 -- 0.0463 7.5 5.207 3279 -- --
66.06 0.379 2.91 0.146 0.161 0.345 -- -0.214 0.0369 7.74 4.9 3265 -- --
66.05 0.379 2.91 0.155 0.163 0.375 -- -- 0.0479 7.84 5.2 3330 -- --
67.21 0.382 2.92 0.143 -- 0.333 -- -0.147 0.042 -- 5.3 2924 -- --
67.82 0.386 2.92 0.0502 0.134 -- -0.121 -- 0.0153 7.36 -- -- -- --
67.85 0.386 2.92 0.0481 0.134 -- -- -- 0.0158 7.73 -- -- -- --
67.23 0.382 2.92 0.137 -- 0.343 -- -- 0.0382 -- 5.293 2924 -- --
66.59 0.38 2.92 -- 0.166 0.309 -- -- 0.0174 7.74 4.852 3354 -- --
68.81 0.388 2.93 0.0498 -- -- -- -- 0.0177 -- -- -- -- --
67.91 0.385 2.92 -- 0.134 -- -- -- 0.0105 7.7 -- -- -- --
67.69 0.383 2.92 -- -- 0.287 -- -- 0.0241 -- 5.202 2924 -- --
68.88 0.387 2.93 -- -- -- -- -- 0.0122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.91 temperature 25.0 30 > th dose independent rect. 7 1
3 58.17 temperature 25.0 10 > th dose dependent rect. 7 1
4 58.89 humidity 80.0 10 < th dose independent rect. 1 7
9 58.98 humidity 80.0 10 < th dose independent rect. 5 3
11 59.06 humidity 80.0 10 < th dose independent rect. 7 1
16 59.99 radiation 10.0 30 > th dose independent rect. 7 1
48 62.47 wind 7.0 4320 > th dose independent rect. 1 1
53 62.47 wind 7.0 4320 > th dose dependent rect. 1 1
58 62.56 wind 3.0 10 < th dose dependent rect. 7 1
59 62.92 atmosphere 1005.0 30 > th dose dependent rect. 2 1
61 62.97 atmosphere 1005.0 30 > th dose independent rect. 2 1
63 62.98 wind 3.0 30 < th dose independent rect. 2 1
64 62.98 temperature 15.0 30 > th dose dependent rect. 2 1
65 62.99 wind 3.0 30 < th dose dependent rect. 2 1
76 63.02 temperature 10.0 30 > th dose independent rect. 2 1
78 63.02 temperature 30.0 30 < th dose independent rect. 2 1
79 63.02 humidity 50.0 30 > th dose independent rect. 2 1
82 63.02 atmosphere 995.0 30 > th dose independent rect. 2 1
84 63.02 atmosphere 1010.0 30 < th dose independent rect. 2 1
86 63.02 radiation 1.0 30 < th dose independent rect. 2 1
91 63.02 precipitation 0.1 30 < th dose independent rect. 2 1
92 63.02 temperature 10.0 30 > th dose independent rect. 3 23
93 63.02 radiation 1.0 30 < th dose dependent rect. 2 1
98 63.02 precipitation 0.1 30 < th dose dependent rect. 2 1
100 63.06 humidity 50.0 30 > th dose dependent rect. 2 1
109 63.14 wind 1.0 720 < th dose dependent rect. 22 1
130 63.22 temperature 30.0 30 < th dose dependent rect. 2 1
131 63.22 atmosphere 1015.0 30 < th dose dependent rect. 2 1
137 63.44 wind 1.0 30 > th dose independent rect. 2 1
138 63.47 atmosphere 1005.0 30 > th dose independent rect. 7 1
150 63.66 wind 1.0 720 < th dose independent rect. 22 1
152 63.67 wind 9.0 30 < th dose independent rect. 3 23
191 63.88 wind 9.0 4320 > th dose independent rect. 19 1
205 63.88 wind 9.0 4320 > th dose dependent rect. 19 1
210 63.93 radiation 20.0 10 < th dose independent rect. 7 1
216 63.94 wind 3.0 10 > th dose dependent rect. 8 1
233 64.13 wind 1.0 720 < th dose dependent rect. 15 9
234 64.14 wind 3.0 10 < th dose independent rect. 7 1
280 64.70 radiation 10.0 10 > th dose independent sin 11 NA
282 64.73 wind 1.0 720 < th dose dependent rect. 2 1
313 65.01 wind 9.0 1440 > th dose dependent rect. 9 1
324 65.05 wind 1.0 720 < th dose independent rect. 2 1
349 65.27 wind 9.0 1440 > th dose independent rect. 9 1
371 65.36 humidity 70.0 30 > th dose independent rect. 7 1
390 65.47 wind 1.0 720 > th dose independent rect. 13 15
399 65.51 wind 7.0 4320 < th dose independent rect. 1 1
414 65.59 wind 9.0 1440 < th dose independent rect. 9 1
415 65.59 precipitation 0.1 1440 < th dose independent rect. 8 1
416 65.59 precipitation 0.1 1440 < th dose dependent rect. 8 1
418 65.61 wind 1.0 720 > th dose independent rect. 18 9
419 65.61 wind 1.0 720 > th dose independent rect. 8 20
427 65.65 wind 1.0 30 > th dose independent rect. 7 1
441 65.70 temperature 25.0 30 > th dose independent rect. 20 13
444 65.71 wind 1.0 720 < th dose independent rect. 21 6
454 65.72 wind 1.0 1440 > th dose independent rect. 22 1
457 65.72 atmosphere 1015.0 30 < th dose independent rect. 3 23
458 65.73 wind 7.0 4320 < th dose independent rect. 7 1
461 65.74 wind 1.0 720 > th dose independent sin 17 NA
465 65.75 atmosphere 1000.0 30 > th dose independent rect. 8 23
466 65.75 radiation 40.0 90 < th dose dependent rect. 7 1
482 65.78 temperature 10.0 1440 > th dose independent rect. 8 1
487 65.78 humidity 50.0 1440 > th dose independent rect. 8 1
490 65.78 atmosphere 995.0 1440 > th dose independent rect. 8 1
493 65.78 atmosphere 1015.0 1440 < th dose independent rect. 8 1
494 65.78 temperature 10.0 1440 > th dose independent rect. 9 23
498 65.79 atmosphere 1010.0 90 < th dose independent rect. 7 1
501 65.79 wind 7.0 4320 < th dose independent rect. 4 4
502 65.79 wind 9.0 30 < th dose independent rect. 8 23
509 65.80 humidity 90.0 10 < th dose dependent rect. 7 1
511 65.81 temperature 10.0 30 > th dose independent rect. 7 1
513 65.81 temperature 30.0 30 < th dose independent rect. 7 1
514 65.81 humidity 50.0 30 > th dose independent rect. 7 1
518 65.81 precipitation 0.1 30 < th dose independent rect. 7 1
525 65.81 temperature 10.0 30 > th dose independent rect. 8 23
528 65.81 precipitation 0.1 30 < th dose dependent rect. 7 1
542 65.84 wind 5.0 4320 < th dose independent rect. 4 1
548 65.84 precipitation 0.1 30 < th dose independent rect. 8 23
550 65.84 precipitation 0.1 30 < th dose dependent rect. 8 23
556 65.85 atmosphere 995.0 30 > th dose dependent rect. 7 1
562 65.86 wind 1.0 720 < th dose dependent rect. 15 13
563 65.86 wind 1.0 720 < th dose dependent rect. 13 15
577 65.87 wind 5.0 4320 > th dose independent rect. 4 4
586 65.88 wind 5.0 4320 > th dose independent rect. 4 1
604 65.88 wind 1.0 720 < th dose dependent rect. 17 11
608 65.89 wind 1.0 1440 > th dose independent rect. 1 2
613 65.89 wind 3.0 4320 > th dose dependent rect. 4 1
616 65.89 wind 1.0 720 < th dose dependent rect. 21 7
650 65.93 radiation 10.0 10 > th dose independent rect. 12 21
672 65.95 temperature 25.0 10 > th dose dependent rect. 20 12
687 65.97 atmosphere 1015.0 90 < th dose dependent rect. 7 1
694 65.98 wind 7.0 4320 < th dose independent rect. 23 1
701 65.98 wind 1.0 720 < th dose dependent sin 18 NA
702 65.98 wind 9.0 4320 > th dose dependent rect. 22 1
706 65.99 wind 1.0 720 < th dose independent sin 17 NA
712 65.99 wind 1.0 720 > th dose independent rect. 22 6
757 66.02 temperature 25.0 10 > th dose dependent rect. 3 5
760 66.03 wind 9.0 4320 > th dose independent rect. 21 1
788 66.04 wind 1.0 720 > th dose independent rect. 11 17
792 66.04 wind 9.0 4320 > th dose dependent rect. 22 4
904 66.13 precipitation 0.1 30 < th dose independent rect. 3 23
914 66.13 precipitation 0.1 30 < th dose dependent rect. 3 23
953 66.16 temperature 30.0 10 < th dose independent rect. 8 23
954 66.16 humidity 50.0 30 > th dose independent rect. 8 23