Os03g0424800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S19-3.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0424800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 40S ribosomal protein S19-3.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.15 | 0.446 | 13.5 | 0.226 | 0.863 | 0.814 | 0.754 | -0.829 | 0.189 | 18 | 20.5 | 2845 | -- | -- |
| 91.63 | 0.446 | 13.5 | 0.366 | 0.832 | 0.91 | 0.647 | -- | 0.212 | 18 | 20.6 | 2825 | -- | -- |
| 91.53 | 0.446 | 13.5 | 0.201 | 0.867 | 0.815 | -- | -0.89 | 0.186 | 17.9 | 20.58 | 2825 | -- | -- |
| 92.63 | 0.448 | 13.5 | 0.321 | 0.838 | 1.02 | -- | -- | 0.223 | 18 | 19.8 | 2879 | -- | -- |
| 107.73 | 0.483 | 13.5 | 0.36 | -- | 0.743 | -- | -0.664 | 0.0164 | -- | 25.6 | 332 | -- | -- |
| 110.21 | 0.492 | 13.4 | 0.899 | 0.832 | -- | 0.928 | -- | 0.48 | 18.1 | -- | -- | -- | -- |
| 112.33 | 0.496 | 13.4 | 0.891 | 0.837 | -- | -- | -- | 0.484 | 18.1 | -- | -- | -- | -- |
| 105.27 | 0.478 | 13.5 | 0.649 | -- | 0.808 | -- | -- | 0.147 | -- | 25.6 | 349 | -- | -- |
| 94.97 | 0.454 | 13.5 | -- | 0.854 | 1.18 | -- | -- | 0.162 | 18.1 | 19.7 | 2890 | -- | -- |
| 148.65 | 0.57 | 13.4 | 0.867 | -- | -- | -- | -- | 0.465 | -- | -- | -- | -- | -- |
| 133.23 | 0.54 | 13.5 | -- | 0.824 | -- | -- | -- | 0.385 | 18.1 | -- | -- | -- | -- |
| 116.13 | 0.502 | 13.5 | -- | -- | 0.877 | -- | -- | 0.0956 | -- | 25.73 | 364 | -- | -- |
| 168.46 | 0.606 | 13.4 | -- | -- | -- | -- | -- | 0.369 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.83 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 6 | 86.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 12 | 86.37 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 41 | 87.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 43 | 87.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 80 | 88.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 86 | 88.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 93 | 88.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 168 | 89.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 170 | 89.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 175 | 89.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 213 | 89.63 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 257 | 89.82 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 299 | 89.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 349 | 90.15 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 361 | 90.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 365 | 90.20 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 366 | 90.21 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 401 | 90.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 459 | 90.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 645 | 90.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 652 | 90.95 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 725 | 91.13 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 744 | 91.16 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 780 | 91.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 932 | 91.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 958 | 91.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |