Os03g0424200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0424200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.37 | 0.32 | 8.7 | 1.22 | 0.376 | -0.622 | -0.427 | 2.41 | 0.277 | 20.8 | 26.19 | 1171 | -- | -- |
| 48 | 0.323 | 8.77 | 0.675 | 0.347 | -0.346 | -0.381 | -- | 0.15 | 20.6 | 26.39 | 2639 | -- | -- |
| 46.96 | 0.319 | 8.7 | 1.19 | 0.375 | -0.605 | -- | 2.19 | 0.268 | 20.9 | 26.18 | 1173 | -- | -- |
| 48.46 | 0.324 | 8.77 | 0.687 | 0.348 | -0.346 | -- | -- | 0.151 | 20.7 | 26.4 | 2623 | -- | -- |
| 53.98 | 0.342 | 8.71 | 1.12 | -- | -0.524 | -- | 1.78 | 0.243 | -- | 26.4 | 1289 | -- | -- |
| 52.75 | 0.341 | 8.77 | 0.565 | 0.327 | -- | -0.419 | -- | 0.141 | 20.1 | -- | -- | -- | -- |
| 53.28 | 0.342 | 8.77 | 0.576 | 0.327 | -- | -- | -- | 0.141 | 20.1 | -- | -- | -- | -- |
| 54.69 | 0.344 | 8.76 | 0.677 | -- | -0.315 | -- | -- | 0.156 | -- | 26.2 | 1327 | -- | -- |
| 60.01 | 0.361 | 8.79 | -- | 0.332 | -0.217 | -- | -- | 0.0541 | 20.7 | 28 | 2620 | -- | -- |
| 59.15 | 0.359 | 8.76 | 0.574 | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
| 62.04 | 0.368 | 8.78 | -- | 0.323 | -- | -- | -- | 0.0763 | 20.3 | -- | -- | -- | -- |
| 65.94 | 0.378 | 8.78 | -- | -- | -0.196 | -- | -- | 0.0562 | -- | 27.9 | 1287 | -- | -- |
| 67.83 | 0.384 | 8.78 | -- | -- | -- | -- | -- | 0.073 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 3 | 43.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 32 | 44.55 | temperature | 20 | 10 | > th | dose dependent | sin | 12 | NA |
| 82 | 45.25 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 17 |
| 87 | 45.30 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 4 |
| 95 | 45.47 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 7 |
| 107 | 45.56 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 18 |
| 113 | 45.59 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 18 |
| 144 | 45.78 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 154 | 45.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 18 | 10 |
| 203 | 46.02 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 206 | 46.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 207 | 46.04 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 232 | 46.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 295 | 46.32 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 300 | 46.34 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 312 | 46.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 326 | 46.41 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 343 | 46.44 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 365 | 46.47 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 385 | 46.50 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 388 | 46.51 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 406 | 46.53 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 430 | 46.55 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 10 |
| 476 | 46.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 482 | 46.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 525 | 46.67 | temperature | 10 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 527 | 46.68 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 1 |
| 550 | 46.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 554 | 46.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 555 | 46.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 558 | 46.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 577 | 46.75 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 593 | 46.77 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 609 | 46.79 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 613 | 46.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 616 | 46.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 12 | 16 |
| 624 | 46.81 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 636 | 46.81 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 670 | 46.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 14 | 14 |
| 702 | 46.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 725 | 46.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 728 | 46.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 739 | 46.90 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 755 | 46.92 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 764 | 46.92 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 20 |
| 770 | 46.92 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 800 | 46.95 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 812 | 46.95 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 841 | 46.97 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 875 | 46.99 | humidity | 60 | 270 | > th | dose independent | rect. | 6 | 9 |
| 929 | 47.02 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 944 | 47.02 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 21 |