FiT-DB / Search/ Help/ Sample detail

Os03g0424000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.18 (0.0211) R2 : 0.642
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.54 (0.0552) R2dC : 0.614 R2C : 0.612
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.242 (0.0444) R2dN8 : 0.0301 R2N8 : 0.0275
σ : 0.398
deviance : 72.51
__
_____
C
peak time of C : 17.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.23 0.367 8.17 0.476 1.54 -0.406 0.163 0.15 -0.167 18.5 10 10 -- --
61.75 0.366 8.18 0.375 1.49 -0.399 0.253 -- -0.196 18.3 17.7 18 -- --
62.3 0.368 8.17 0.476 1.54 -0.406 -- 0.15 -0.167 18.5 10 10 -- --
61.8 0.366 8.17 0.402 1.51 -0.387 -- -- -0.186 18.3 17.7 18 -- --
103.76 0.474 8.29 0.419 -- -0.98 -- -0.525 -0.594 -- 0.5307 610 -- --
67.51 0.385 8.16 0.433 1.55 -- 0.159 -- -0.194 17.4 -- -- -- --
67.57 0.385 8.16 0.433 1.55 -- -- -- -0.194 17.4 -- -- -- --
70.04 0.39 8.15 0.379 -- -1.71 -- -- -0.229 -- 0.2298 668 -- --
66.43 0.38 8.16 -- 1.52 -0.384 -- -- -0.203 18.2 17.71 17 -- --
192.66 0.649 8.14 0.381 -- -- -- -- -0.232 -- -- -- -- --
72.51 0.398 8.18 -- 1.54 -- -- -- -0.242 17.4 -- -- -- --
71.81 0.395 8.16 -- -- -1.78 -- -- -0.267 -- 0.198 679 -- --
196.48 0.654 8.15 -- -- -- -- -- -0.274 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.70 wind 7.0 270 < th dose independent rect. 5 22
2 49.78 wind 7.0 270 < th dose independent rect. 6 20
6 50.81 precipitation 0.1 270 < th dose independent rect. 3 2
7 50.81 precipitation 0.1 270 < th dose dependent rect. 3 2
8 50.83 wind 5.0 270 < th dose independent rect. 3 2
9 50.87 wind 7.0 90 < th dose independent rect. 8 19
11 51.06 wind 5.0 270 < th dose independent rect. 2 4
13 51.14 precipitation 0.1 270 < th dose independent rect. 2 4
15 51.14 precipitation 0.1 270 < th dose dependent rect. 2 4
17 51.29 radiation 1.0 270 < th dose dependent rect. 3 2
18 51.31 wind 9.0 270 < th dose dependent rect. 3 2
20 51.33 temperature 10.0 270 > th dose independent rect. 3 2
22 51.33 temperature 30.0 270 < th dose independent rect. 3 2
23 51.33 humidity 50.0 270 > th dose independent rect. 3 2
26 51.33 atmosphere 995.0 270 > th dose independent rect. 3 2
27 51.33 atmosphere 1010.0 270 < th dose independent rect. 3 2
29 51.33 radiation 20.0 270 < th dose independent rect. 3 2
32 51.33 temperature 10.0 270 > th dose independent rect. 5 22
33 51.33 radiation 30.0 270 < th dose dependent rect. 3 2
38 51.36 radiation 1.0 270 < th dose independent rect. 3 2
44 51.53 atmosphere 1010.0 270 < th dose independent rect. 2 4
45 51.55 radiation 30.0 270 < th dose dependent rect. 2 4
48 51.56 temperature 10.0 270 > th dose independent rect. 2 4
50 51.56 temperature 30.0 270 < th dose independent rect. 2 4
51 51.56 humidity 50.0 270 > th dose independent rect. 2 4
54 51.56 atmosphere 995.0 270 > th dose independent rect. 2 4
56 51.56 radiation 20.0 270 < th dose independent rect. 2 4
59 51.56 temperature 10.0 270 > th dose independent rect. 6 20
63 51.61 wind 9.0 270 < th dose dependent rect. 2 4
81 51.82 wind 7.0 10 < th dose independent rect. 8 20
93 51.93 temperature 10.0 270 > th dose dependent rect. 2 4
95 51.97 temperature 10.0 270 > th dose dependent rect. 3 2
101 52.12 radiation 10.0 270 < th dose dependent rect. 1 12
103 52.14 humidity 50.0 270 > th dose dependent rect. 3 2
111 52.25 precipitation 0.1 270 < th dose independent rect. 6 20
112 52.25 precipitation 0.1 270 < th dose dependent rect. 6 20
127 52.30 wind 9.0 270 < th dose dependent rect. 6 20
166 52.57 atmosphere 1015.0 270 < th dose dependent rect. 3 2
172 52.62 humidity 50.0 270 > th dose dependent rect. 2 4
190 52.70 temperature 10.0 90 > th dose independent rect. 8 19
195 52.73 radiation 1.0 270 < th dose independent rect. 2 11
213 52.81 temperature 15.0 270 > th dose independent rect. 11 10
214 52.83 wind 7.0 270 < th dose independent rect. 21 14
240 52.97 atmosphere 1015.0 270 < th dose independent rect. 11 10
278 53.14 wind 9.0 10 < th dose dependent rect. 4 4
282 53.17 wind 5.0 10 < th dose independent rect. 4 4
285 53.19 temperature 10.0 270 > th dose independent rect. 21 14
286 53.19 atmosphere 995.0 270 > th dose independent rect. 21 14
300 53.36 atmosphere 995.0 270 > th dose independent rect. 6 20
308 53.40 precipitation 0.1 10 < th dose independent rect. 4 4
312 53.40 precipitation 0.1 10 < th dose dependent rect. 4 4
320 53.44 atmosphere 995.0 90 > th dose independent rect. 8 19
326 53.46 temperature 10.0 10 > th dose independent rect. 4 4
328 53.46 temperature 30.0 10 < th dose independent rect. 4 4
329 53.46 humidity 50.0 10 > th dose independent rect. 4 4
331 53.46 atmosphere 995.0 10 > th dose independent rect. 4 4
333 53.46 atmosphere 1015.0 10 < th dose independent rect. 4 4
335 53.46 temperature 10.0 10 > th dose independent rect. 8 20
343 53.50 humidity 50.0 270 > th dose independent rect. 21 14
349 53.53 precipitation 0.1 270 < th dose independent rect. 11 10
351 53.53 precipitation 0.1 270 < th dose dependent rect. 11 10
383 53.62 radiation 40.0 10 < th dose independent rect. 4 4
397 53.70 wind 1.0 270 > th dose independent rect. 2 3
457 53.95 atmosphere 995.0 10 > th dose independent rect. 8 20
459 53.97 temperature 10.0 10 > th dose dependent rect. 4 4
464 53.99 wind 1.0 270 > th dose independent rect. 11 10
565 54.20 wind 7.0 270 < th dose independent rect. 6 7
573 54.21 precipitation 0.1 270 < th dose independent rect. 21 14
578 54.21 precipitation 0.1 270 < th dose dependent rect. 21 14
609 54.31 temperature 15.0 270 > th dose independent rect. 13 17
673 54.45 atmosphere 1015.0 10 < th dose dependent rect. 4 4
683 54.47 wind 9.0 270 < th dose independent rect. 11 10
684 54.47 radiation 40.0 10 < th dose dependent rect. 4 5
712 54.55 humidity 50.0 270 > th dose independent rect. 6 20
721 54.58 precipitation 0.1 10 < th dose independent rect. 8 20
725 54.58 precipitation 0.1 10 < th dose dependent rect. 8 20
747 54.59 wind 7.0 270 < th dose independent rect. 6 9
775 54.62 wind 9.0 270 < th dose dependent rect. 6 7
791 54.66 temperature 10.0 270 > th dose dependent rect. 7 4
812 54.69 radiation 10.0 270 < th dose dependent sin 5 NA
816 54.70 wind 7.0 270 < th dose independent rect. 17 9
817 54.70 temperature 15.0 90 > th dose independent rect. 15 16
825 54.72 radiation 1.0 270 < th dose dependent sin 3 NA
873 54.78 precipitation 0.1 270 < th dose independent rect. 13 17
877 54.78 precipitation 0.1 270 < th dose dependent rect. 13 17
903 54.85 temperature 10.0 270 > th dose dependent rect. 6 6
905 54.86 precipitation 0.1 270 < th dose independent rect. 6 7
906 54.86 precipitation 0.1 270 < th dose dependent rect. 6 7
911 54.87 radiation 40.0 270 < th dose independent rect. 13 17
921 54.89 wind 9.0 270 < th dose dependent rect. 7 4
929 54.91 temperature 10.0 270 > th dose independent rect. 6 7
930 54.91 atmosphere 995.0 270 > th dose independent rect. 6 7
931 54.91 atmosphere 1015.0 270 < th dose independent rect. 6 7