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Os03g0423000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.35 (0.0126) R2 : 0.0127
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0644 (0.0266) R2dN8 : 0.0164 R2N8 : 0.0127
σ : 0.238
deviance : 25.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.98 0.22 9.28 0.575 0.067 0.0926 0.0306 1.72 0.0612 12.2 11.92 4643 -- --
23.57 0.226 9.34 0.141 0.0748 0.18 0.0448 -- -0.0123 12.3 30.5 4063 -- --
21.97 0.218 9.28 0.573 0.0727 0.0965 -- 1.67 0.0574 11.8 14.2 4683 -- --
23.58 0.226 9.34 0.155 0.079 0.179 -- -- -0.0116 12 30.3 4068 -- --
22.25 0.22 9.28 0.579 -- 0.0807 -- 1.66 0.0622 -- 14.4 4633 -- --
24.68 0.233 9.35 0.194 0.0626 -- 0.0307 -- -0.0421 12.2 -- -- -- --
24.68 0.233 9.34 0.195 0.0626 -- -- -- -0.0421 11.9 -- -- -- --
23.95 0.228 9.34 0.155 -- 0.17 -- -- -0.0137 -- 30.2 4123 -- --
24.18 0.229 9.34 -- 0.0755 0.186 -- -- -0.0237 11.6 29.84 4922 -- --
24.93 0.233 9.35 0.193 -- -- -- -- -0.0429 -- -- -- -- --
25.68 0.237 9.35 -- 0.0602 -- -- -- -0.0638 11.7 -- -- -- --
24.54 0.231 9.34 -- -- 0.186 -- -- -0.0307 -- 30.2 4072 -- --
25.91 0.238 9.35 -- -- -- -- -- -0.0644 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.82 atmosphere 1005 14400 < th dose independent rect. 21 3
2 20.84 atmosphere 1005 14400 < th dose independent rect. 22 1
4 20.84 wind 9 43200 > th dose independent rect. 18 12
5 20.85 humidity 70 43200 > th dose dependent rect. 18 5
8 20.89 wind 9 43200 < th dose independent rect. 18 12
9 20.90 atmosphere 1005 14400 < th dose independent rect. 8 1
11 20.91 humidity 70 43200 > th dose dependent rect. 20 2
19 20.96 wind 1 14400 < th dose dependent rect. 2 1
20 20.96 wind 7 43200 > th dose dependent rect. 18 12
31 21.03 atmosphere 1005 14400 > th dose independent rect. 8 2
35 21.04 atmosphere 1005 14400 < th dose independent rect. 8 4
38 21.04 wind 9 43200 > th dose independent rect. 16 16
42 21.05 atmosphere 1005 14400 > th dose independent rect. 8 4
46 21.05 wind 9 43200 > th dose dependent rect. 16 14
53 21.07 atmosphere 1005 14400 < th dose independent rect. 11 1
113 21.19 wind 9 43200 < th dose independent rect. 18 7
138 21.21 humidity 60 43200 > th dose dependent sin 17 NA
140 21.22 wind 9 43200 < th dose independent rect. 18 5
145 21.22 wind 7 43200 > th dose dependent rect. 18 8
157 21.24 atmosphere 1005 14400 < th dose independent rect. 18 18
160 21.24 humidity 60 43200 > th dose dependent rect. 12 13
168 21.25 temperature 10 4320 > th dose dependent rect. 20 1
170 21.25 temperature 30 4320 < th dose dependent rect. 20 1
173 21.26 wind 9 43200 > th dose independent rect. 18 5
175 21.26 wind 7 43200 > th dose independent rect. 18 7
249 21.30 atmosphere 1005 14400 < th dose independent rect. 8 21
254 21.30 temperature 30 4320 < th dose dependent rect. 17 5
261 21.31 atmosphere 1005 14400 < th dose independent sin 12 NA
263 21.31 wind 3 4320 > th dose independent rect. 13 1
270 21.31 atmosphere 1005 14400 < th dose independent rect. 8 16
283 21.31 temperature 10 4320 > th dose dependent rect. 17 5
291 21.32 atmosphere 1005 14400 > th dose independent rect. 4 1
349 21.33 wind 7 43200 > th dose dependent rect. 20 9
357 21.33 humidity 60 43200 > th dose dependent rect. 5 21
363 21.34 wind 7 43200 < th dose independent rect. 20 8
376 21.34 atmosphere 1005 14400 < th dose independent rect. 3 21
430 21.36 atmosphere 1005 14400 < th dose independent no NA NA
461 21.36 humidity 60 43200 > th dose dependent rect. 1 22
471 21.37 wind 7 43200 > th dose independent rect. 20 5
472 21.37 wind 7 43200 < th dose independent rect. 20 5
479 21.37 atmosphere 1005 14400 > th dose independent rect. 18 18
533 21.38 atmosphere 1005 14400 < th dose independent rect. 11 23
537 21.38 humidity 60 43200 > th dose dependent no NA NA
559 21.39 atmosphere 1005 14400 > th dose independent rect. 3 9
590 21.39 wind 5 4320 < th dose dependent rect. 13 3
605 21.39 humidity 60 43200 > th dose dependent rect. 11 23
606 21.39 humidity 60 43200 > th dose dependent rect. 15 23
619 21.40 atmosphere 1005 14400 > th dose independent rect. 21 15
629 21.40 wind 5 4320 < th dose dependent rect. 15 1
650 21.41 wind 9 43200 > th dose independent sin 11 NA
651 21.41 wind 9 43200 < th dose independent sin 11 NA
659 21.41 atmosphere 1005 14400 < th dose independent rect. 3 9
698 21.42 atmosphere 1005 14400 < th dose independent sin 4 NA
700 21.42 wind 3 4320 > th dose independent rect. 15 1
701 21.42 atmosphere 1005 14400 < th dose independent rect. 3 2
713 21.42 atmosphere 1005 14400 > th dose independent rect. 23 13
810 21.44 wind 1 14400 > th dose independent rect. 2 1
811 21.44 wind 3 4320 > th dose independent rect. 11 5
815 21.44 atmosphere 1005 14400 > th dose independent rect. 18 11
848 21.45 atmosphere 1005 14400 > th dose independent rect. 19 4
882 21.46 atmosphere 1005 14400 > th dose independent sin 4 NA
936 21.47 atmosphere 1005 14400 > th dose independent rect. 21 1
964 21.47 atmosphere 1005 14400 > th dose independent rect. 8 21