Os03g0422300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0422300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.3 | 0.302 | 12 | -0.279 | 0.671 | 1.57 | 0.336 | -1.08 | -0.502 | 7.92 | 8.288 | 1101 | -- | -- |
| 42.27 | 0.303 | 12 | -0.0598 | 0.657 | 1.54 | 0.438 | -- | -0.446 | 7.94 | 8.554 | 1132 | -- | -- |
| 41.61 | 0.3 | 12 | -0.285 | 0.671 | 1.55 | -- | -1.16 | -0.505 | 7.81 | 8.3 | 1103 | -- | -- |
| 42.73 | 0.304 | 12 | -0.0445 | 0.638 | 1.53 | -- | -- | -0.442 | 7.75 | 8.624 | 1154 | -- | -- |
| 59.85 | 0.36 | 12 | -0.234 | -- | 1.51 | -- | -0.811 | -0.482 | -- | 7.349 | 1351 | -- | -- |
| 79.47 | 0.418 | 11.9 | 0.407 | 0.619 | -- | 0.03 | -- | -0.176 | 6.54 | -- | -- | -- | -- |
| 79.47 | 0.417 | 11.9 | 0.407 | 0.619 | -- | -- | -- | -0.176 | 6.53 | -- | -- | -- | -- |
| 60.51 | 0.362 | 12 | -0.0531 | -- | 1.5 | -- | -- | -0.44 | -- | 5.397 | 1362 | -- | -- |
| 42.77 | 0.305 | 11.9 | -- | 0.63 | 1.5 | -- | -- | -0.434 | 7.72 | 8.787 | 1167 | -- | -- |
| 99.44 | 0.466 | 11.9 | 0.422 | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
| 83.84 | 0.428 | 11.9 | -- | 0.625 | -- | -- | -- | -0.222 | 6.49 | -- | -- | -- | -- |
| 60.57 | 0.362 | 12 | -- | -- | 1.48 | -- | -- | -0.431 | -- | 5.37 | 1360 | -- | -- |
| 104.15 | 0.476 | 11.9 | -- | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 2 | 40.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 34 | 42.23 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 42 | 42.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 18 |
| 43 | 42.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 48 | 42.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 54 | 42.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 64 | 42.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 102 | 42.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 103 | 42.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 129 | 42.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 151 | 42.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 163 | 42.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 203 | 42.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 5 |
| 227 | 42.54 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 282 | 42.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 315 | 42.61 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 326 | 42.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 391 | 42.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 652 | 43.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 699 | 43.11 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 712 | 43.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 749 | 43.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 791 | 43.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 23 |